Wall clock time and date at job start Sun Mar 29 2020 21:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.35311 * 126.12914 * 85.00127 * 3 2 1 5 5 C 1.39868 * 107.92268 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.89832 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.46553 * 95.00803 * 6 5 4 8 8 C 1.46903 * 110.99869 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47037 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00388 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99721 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99727 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 120.00149 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.46854 * 90.00162 * 13 11 9 15 15 H 1.48497 * 109.46918 * 210.00236 * 13 11 9 16 16 H 1.48503 * 109.46745 * 330.00188 * 13 11 9 17 17 N 1.30838 * 108.20045 * 0.02562 * 5 4 3 18 18 N 1.34949 * 126.12555 * 264.68786 * 3 2 1 19 19 H 0.97005 * 126.03781 * 0.04587 * 18 3 2 20 20 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 25 25 H 1.08000 * 126.03504 * 359.94205 * 4 3 2 26 26 H 1.09001 * 109.47004 * 215.00123 * 6 5 4 27 27 H 1.08993 * 109.47159 * 335.00714 * 6 5 4 28 28 H 1.00898 * 111.00442 * 303.95265 * 7 6 5 29 29 H 1.08998 * 109.47297 * 299.99619 * 8 7 6 30 30 H 1.08999 * 109.47055 * 60.00063 * 8 7 6 31 31 H 0.96996 * 119.99670 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2084 2.2048 1.0887 5 6 2.6877 3.4446 0.6534 6 6 3.0217 4.6214 1.5336 7 7 4.4577 4.6092 1.8431 8 6 4.8209 5.7451 2.7010 9 6 6.2978 5.6989 2.9970 10 1 6.9058 4.9049 2.5892 11 6 6.8728 6.6697 3.7896 12 7 8.1618 6.6296 4.0475 13 14 5.8211 8.0426 4.4958 14 1 5.2899 7.6284 5.8191 15 1 6.6467 9.2666 4.6548 16 1 4.6909 8.3240 3.5746 17 7 2.7950 3.4065 -0.6500 18 7 2.3926 2.1373 -1.0853 19 1 2.3736 1.8289 -2.0049 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 2.0129 1.9231 2.1128 26 1 2.7697 5.5463 1.0148 27 1 2.4499 4.5566 2.4593 28 1 4.7289 3.7346 2.2667 29 1 4.5815 6.6776 2.1899 30 1 4.2616 5.6886 3.6348 31 1 8.5663 7.3128 4.6048 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819053864.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:47 Heat of formation + Delta-G solvation = 36.439461 kcal Electronic energy + Delta-G solvation = -12999.903835 eV Core-core repulsion = 10702.368089 eV Total energy + Delta-G solvation = -2297.535746 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.19924 -37.32382 -35.08981 -34.46516 -32.51220 -29.94321 -29.64657 -26.23352 -24.62925 -23.09638 -21.31842 -20.86508 -18.89818 -18.28611 -16.81383 -16.25288 -15.85067 -15.31221 -15.18262 -14.84368 -14.65592 -14.36483 -14.13511 -13.54487 -13.24157 -13.10400 -12.63909 -12.41999 -12.23408 -11.95969 -11.79393 -11.50492 -11.40831 -10.80381 -10.34032 -9.55486 -9.15892 -8.28901 -6.34069 0.92861 1.37205 1.40255 1.51819 1.74861 1.99708 2.36530 3.05143 3.54418 3.75062 3.79029 4.12141 4.34856 4.42452 4.57357 4.65347 4.77968 4.81104 4.82134 4.97399 5.06656 5.07912 5.33239 5.38918 5.52358 5.64881 5.93170 6.47771 6.55081 6.61934 6.73893 6.79618 7.30728 8.88147 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.067151 B = 0.005370 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.872504 B = 5213.262686 C = 5267.746588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C 0.100 3.900 4 C -0.285 4.285 5 C 0.074 3.926 6 C 0.136 3.864 7 N -0.686 5.686 8 C 0.176 3.824 9 C -0.531 4.531 10 H 0.033 0.967 11 C 0.007 3.993 12 N -0.949 5.949 13 Si 0.955 3.045 14 H -0.262 1.262 15 H -0.281 1.281 16 H -0.249 1.249 17 N -0.320 5.320 18 N -0.470 5.470 19 H 0.447 0.553 20 H 0.050 0.950 21 H 0.083 0.917 22 H 0.054 0.946 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.158 0.842 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.338 0.662 29 H 0.027 0.973 30 H -0.004 1.004 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.364 -12.764 -6.622 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.097 4.097 3 C -0.030 4.030 4 C -0.314 4.314 5 C -0.093 4.093 6 C 0.005 3.995 7 N -0.318 5.318 8 C 0.047 3.953 9 C -0.569 4.569 10 H 0.051 0.949 11 C -0.190 4.190 12 N -0.589 5.589 13 Si 0.778 3.222 14 H -0.186 1.186 15 H -0.207 1.207 16 H -0.173 1.173 17 N -0.144 5.144 18 N -0.180 5.180 19 H 0.293 0.707 20 H 0.069 0.931 21 H 0.102 0.898 22 H 0.073 0.927 23 H 0.120 0.880 24 H 0.113 0.887 25 H 0.176 0.824 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.155 0.845 29 H 0.045 0.955 30 H 0.014 0.986 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.728 -11.686 -8.156 22.745 hybrid contribution -0.224 -0.089 1.354 1.375 sum -17.952 -11.775 -6.803 22.521 Atomic orbital electron populations 1.21733 0.93077 1.03265 1.02094 1.20383 0.97048 0.86782 1.05477 1.21641 0.97840 0.96610 0.86897 1.21404 1.15463 0.93926 1.00648 1.22268 0.98451 0.96865 0.91674 1.20235 0.89130 0.94149 0.95969 1.60306 1.14569 1.06431 1.50449 1.19785 0.94148 0.90884 0.90447 1.21323 0.93684 1.11593 1.30319 0.94859 1.25921 0.96272 1.00647 0.96172 1.70061 1.12711 1.36575 1.39574 0.85597 0.79086 0.77974 0.79550 1.18642 1.20681 1.17275 1.77292 1.23248 1.00249 1.13592 1.46358 1.52487 1.09603 1.09568 0.70686 0.93064 0.89796 0.92672 0.87968 0.88744 0.82429 0.90806 0.91986 0.84466 0.95512 0.98618 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 71.98 0.71 -0.79 16 2 C -0.06 -0.71 6.48 29.85 0.19 -0.52 16 3 C 0.10 2.18 6.46 41.40 0.27 2.45 16 4 C -0.29 -7.72 10.65 21.99 0.23 -7.48 16 5 C 0.07 2.49 6.73 43.10 0.29 2.78 16 6 C 0.14 4.89 6.25 85.56 0.53 5.43 16 7 N -0.69 -30.42 6.48 -521.99 -3.38 -33.80 16 8 C 0.18 8.72 4.51 85.56 0.39 9.11 16 9 C -0.53 -31.95 9.87 25.60 0.25 -31.70 16 10 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 11 C 0.01 0.43 5.47 84.66 0.46 0.89 16 12 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 13 Si 0.96 44.64 27.47 68.60 1.88 46.52 16 14 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 16 H -0.25 -10.90 6.54 99.48 0.65 -10.24 16 17 N -0.32 -11.01 12.70 -47.38 -0.60 -11.61 16 18 N -0.47 -11.55 7.36 -48.00 -0.35 -11.90 16 19 H 0.45 7.72 8.96 -213.33 -1.91 5.81 16 20 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 21 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 26 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.34 14.72 8.72 -89.70 -0.78 13.94 16 29 H 0.03 1.34 7.20 -2.39 -0.02 1.32 16 30 H 0.00 -0.18 7.57 -2.39 -0.02 -0.20 16 31 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -73.65 268.89 -0.44 -74.08 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -1.62 Total: 16.83 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 3.33 Total: -19.84 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -4.04 Total: -117.59 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -73.65 -0.44 -74.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819053864.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.522 kcal (2) G-P(sol) polarization free energy of solvation -73.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds