Wall clock time and date at job start Sun Mar 29 2020 21:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.46955 * 119.99733 * 2 1 4 4 O 1.21662 * 120.00476 * 81.67332 * 3 2 1 5 5 N 1.34781 * 119.99733 * 261.66705 * 3 2 1 6 6 C 1.46499 * 119.99904 * 185.66253 * 5 3 2 7 7 C 1.36813 * 120.00301 * 5.66402 * 5 3 2 8 8 H 1.08002 * 119.99953 * 352.93556 * 7 5 3 9 9 C 1.39071 * 120.00596 * 172.93028 * 7 5 3 10 10 N 1.31351 * 119.99420 * 5.29996 * 9 7 5 11 11 Si 1.86794 * 120.00655 * 185.29404 * 9 7 5 12 12 H 1.48509 * 109.46969 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47472 * 119.99974 * 11 9 7 14 14 H 1.48504 * 109.47462 * 240.00770 * 11 9 7 15 15 C 1.33116 * 120.00196 * 179.97438 * 2 1 3 16 16 C 1.51405 * 136.31644 * 179.62816 * 15 2 1 17 17 C 1.53381 * 87.52135 * 206.06064 * 16 15 2 18 18 C 1.51408 * 136.31809 * 0.02562 * 15 2 1 19 19 H 1.09000 * 109.46974 * 85.09260 * 1 2 3 20 20 H 1.08999 * 109.47034 * 205.08911 * 1 2 3 21 21 H 1.09004 * 109.47316 * 325.08960 * 1 2 3 22 22 H 1.09001 * 109.47165 * 4.10982 * 6 5 3 23 23 H 1.08993 * 109.47314 * 124.11332 * 6 5 3 24 24 H 1.09007 * 109.47011 * 244.11654 * 6 5 3 25 25 H 0.97008 * 120.00131 * 179.97438 * 10 9 7 26 26 H 1.09004 * 113.56691 * 320.64288 * 16 15 2 27 27 H 1.08998 * 113.55883 * 91.37961 * 16 15 2 28 28 H 1.08999 * 113.96848 * 220.30154 * 17 16 15 29 29 H 1.08994 * 113.60138 * 88.78932 * 17 16 15 30 30 H 1.09000 * 113.55613 * 268.62403 * 18 15 2 31 31 H 1.09000 * 113.55650 * 39.35189 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2417 1.2727 0.0000 4 8 2.4137 1.8759 1.0425 5 7 2.7251 1.7717 -1.1549 6 6 3.5625 2.9737 -1.1399 7 6 2.4338 1.1558 -2.3414 8 1 1.9141 0.2091 -2.3450 9 6 2.8066 1.7488 -3.5428 10 7 3.5287 2.8461 -3.5372 11 14 2.2809 0.9850 -5.1643 12 1 1.4799 -0.2371 -4.8991 13 1 1.4592 1.9589 -5.9269 14 1 3.4849 0.6261 -5.9560 15 6 2.1726 -1.1528 0.0005 16 6 3.6257 -1.5781 -0.0061 17 6 3.1716 -2.8831 -0.6719 18 6 1.8145 -2.6239 0.0007 19 1 -0.3633 0.0879 -1.0239 20 1 -0.3633 -0.9307 0.4358 21 1 -0.3634 0.8428 0.5881 22 1 3.7441 3.2771 -0.1089 23 1 4.5131 2.7604 -1.6286 24 1 3.0533 3.7780 -1.6710 25 1 3.7891 3.2596 -4.3752 26 1 4.2574 -0.9615 -0.6455 27 1 4.0426 -1.7199 0.9910 28 1 3.6842 -3.7709 -0.3016 29 1 3.1405 -2.8300 -1.7601 30 1 1.7344 -3.0526 0.9996 31 1 0.9610 -2.8646 -0.6331 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825530486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:29 Heat of formation + Delta-G solvation = 11.031482 kcal Electronic energy + Delta-G solvation = -14139.007863 eV Core-core repulsion = 11808.077594 eV Total energy + Delta-G solvation = -2330.930270 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.95399 -37.52781 -34.72738 -32.29161 -31.28751 -26.71809 -25.84016 -25.00417 -24.41125 -21.70819 -19.43270 -18.03372 -16.37680 -15.69855 -14.94571 -14.56886 -14.24203 -14.14033 -13.15808 -12.85541 -12.54346 -12.03432 -11.84604 -11.64815 -11.34184 -11.33380 -11.12644 -10.98852 -10.66870 -10.42713 -10.35731 -10.31459 -9.80092 -9.09341 -8.41978 -7.90919 -7.88332 -6.26833 -3.84535 2.63204 3.08617 3.18771 3.22412 3.88385 4.07743 4.78932 5.00341 5.10044 5.19886 5.33809 5.53518 5.88072 5.95174 6.01472 6.07213 6.14755 6.22107 6.35490 6.47229 6.62192 6.70801 6.84144 7.10252 7.28457 7.44258 7.50399 7.56137 7.77260 8.43913 9.08085 9.56119 9.95532 10.66695 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.025589 B = 0.013479 C = 0.010856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.964366 B = 2076.823409 C = 2578.577292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.086 4.086 3 C 0.487 3.513 4 O -0.614 6.614 5 N -0.436 5.436 6 C 0.122 3.878 7 C -0.319 4.319 8 H 0.101 0.899 9 C 0.031 3.969 10 N -0.878 5.878 11 Si 0.924 3.076 12 H -0.268 1.268 13 H -0.280 1.280 14 H -0.281 1.281 15 C -0.149 4.149 16 C -0.101 4.101 17 C -0.135 4.135 18 C -0.096 4.096 19 H 0.070 0.930 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.033 0.967 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.266 0.734 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 -8.261 0.995 8.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C 0.275 3.725 4 O -0.503 6.503 5 N -0.151 5.151 6 C -0.021 4.021 7 C -0.447 4.447 8 H 0.119 0.881 9 C -0.172 4.172 10 N -0.518 5.518 11 Si 0.751 3.249 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.207 1.207 15 C -0.150 4.150 16 C -0.138 4.138 17 C -0.172 4.172 18 C -0.134 4.134 19 H 0.088 0.912 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.108 -7.806 1.297 8.189 hybrid contribution -0.150 -0.270 -1.096 1.139 sum -2.258 -8.076 0.201 8.388 Atomic orbital electron populations 1.20543 0.91038 1.01684 1.02101 1.20353 0.95496 0.92121 1.00888 1.17869 0.84180 0.86494 0.83954 1.90628 1.64913 1.62459 1.32277 1.43697 1.41985 1.24158 1.05310 1.21568 0.95566 0.87571 0.97355 1.19780 1.36754 1.05617 0.82571 0.88106 1.25317 0.96238 0.95994 0.99683 1.70218 1.35350 1.19163 1.27026 0.85889 0.78501 0.78995 0.81502 1.19267 1.20571 1.20651 1.22627 0.96860 0.92956 1.02577 1.21982 0.94959 0.96390 1.00466 1.22594 0.96944 0.97343 1.00362 1.22062 0.97731 0.93200 1.00359 0.91167 0.92330 0.91771 0.94843 0.91564 0.91732 0.92349 0.90698 0.89991 0.91527 0.89897 0.89814 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 10.01 36.01 0.36 -1.39 16 2 C -0.09 -1.87 3.97 -102.88 -0.41 -2.27 16 3 C 0.49 12.69 6.93 -12.73 -0.09 12.60 16 4 O -0.61 -17.63 16.46 5.22 0.09 -17.55 16 5 N -0.44 -11.65 3.02 -123.60 -0.37 -12.02 16 6 C 0.12 3.20 8.86 59.85 0.53 3.73 16 7 C -0.32 -8.33 9.39 -15.02 -0.14 -8.47 16 8 H 0.10 2.54 6.43 -52.49 -0.34 2.20 16 9 C 0.03 0.79 5.46 -17.45 -0.10 0.69 16 10 N -0.88 -23.21 9.45 55.50 0.52 -22.68 16 11 Si 0.92 19.81 29.56 -169.99 -5.02 14.78 16 12 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 C -0.15 -2.88 6.41 -100.45 -0.64 -3.52 16 16 C -0.10 -1.80 7.83 -27.56 -0.22 -2.02 16 17 C -0.14 -1.97 8.17 -26.20 -0.21 -2.19 16 18 C -0.10 -1.43 7.63 -27.41 -0.21 -1.64 16 19 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 20 H 0.06 0.89 7.79 -51.93 -0.40 0.48 16 21 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 22 H 0.03 0.85 6.94 -51.93 -0.36 0.49 16 23 H 0.07 1.75 7.07 -51.93 -0.37 1.39 16 24 H 0.06 1.73 7.03 -51.93 -0.37 1.36 16 25 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 26 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 263.14 15.07 3.97 3.97 Total: -1.00 -29.89 263.14 -6.30 -36.18 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.35 Total: 1.79 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -1.12 Total: -4.48 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.15 Total: -34.70 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.09 Total: -17.55 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.89 -6.30 -36.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825530486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.214 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds