Wall clock time and date at job start Sun Mar 29 2020 21:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.46955 * 119.99733 * 2 1 4 4 O 1.21662 * 120.00476 * 81.67332 * 3 2 1 5 5 N 1.34781 * 119.99733 * 261.66705 * 3 2 1 6 6 C 1.46499 * 119.99904 * 185.66253 * 5 3 2 7 7 C 1.36813 * 120.00301 * 5.66402 * 5 3 2 8 8 H 1.08002 * 119.99953 * 352.93556 * 7 5 3 9 9 C 1.39071 * 120.00596 * 172.93028 * 7 5 3 10 10 N 1.31351 * 119.99420 * 5.29996 * 9 7 5 11 11 Si 1.86794 * 120.00655 * 185.29404 * 9 7 5 12 12 H 1.48509 * 109.46969 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47472 * 119.99974 * 11 9 7 14 14 H 1.48504 * 109.47462 * 240.00770 * 11 9 7 15 15 C 1.33116 * 120.00196 * 179.97438 * 2 1 3 16 16 C 1.51405 * 136.31644 * 179.62816 * 15 2 1 17 17 C 1.53381 * 87.52135 * 206.06064 * 16 15 2 18 18 C 1.51408 * 136.31809 * 0.02562 * 15 2 1 19 19 H 1.09000 * 109.46974 * 85.09260 * 1 2 3 20 20 H 1.08999 * 109.47034 * 205.08911 * 1 2 3 21 21 H 1.09004 * 109.47316 * 325.08960 * 1 2 3 22 22 H 1.09001 * 109.47165 * 4.10982 * 6 5 3 23 23 H 1.08993 * 109.47314 * 124.11332 * 6 5 3 24 24 H 1.09007 * 109.47011 * 244.11654 * 6 5 3 25 25 H 0.97008 * 120.00131 * 179.97438 * 10 9 7 26 26 H 1.09004 * 113.56691 * 320.64288 * 16 15 2 27 27 H 1.08998 * 113.55883 * 91.37961 * 16 15 2 28 28 H 1.08999 * 113.96848 * 220.30154 * 17 16 15 29 29 H 1.08994 * 113.60138 * 88.78932 * 17 16 15 30 30 H 1.09000 * 113.55613 * 268.62403 * 18 15 2 31 31 H 1.09000 * 113.55650 * 39.35189 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2417 1.2727 0.0000 4 8 2.4137 1.8759 1.0425 5 7 2.7251 1.7717 -1.1549 6 6 3.5625 2.9737 -1.1399 7 6 2.4338 1.1558 -2.3414 8 1 1.9141 0.2091 -2.3450 9 6 2.8066 1.7488 -3.5428 10 7 3.5287 2.8461 -3.5372 11 14 2.2809 0.9850 -5.1643 12 1 1.4799 -0.2371 -4.8991 13 1 1.4592 1.9589 -5.9269 14 1 3.4849 0.6261 -5.9560 15 6 2.1726 -1.1528 0.0005 16 6 3.6257 -1.5781 -0.0061 17 6 3.1716 -2.8831 -0.6719 18 6 1.8145 -2.6239 0.0007 19 1 -0.3633 0.0879 -1.0239 20 1 -0.3633 -0.9307 0.4358 21 1 -0.3634 0.8428 0.5881 22 1 3.7441 3.2771 -0.1089 23 1 4.5131 2.7604 -1.6286 24 1 3.0533 3.7780 -1.6710 25 1 3.7891 3.2596 -4.3752 26 1 4.2574 -0.9615 -0.6455 27 1 4.0426 -1.7199 0.9910 28 1 3.6842 -3.7709 -0.3016 29 1 3.1405 -2.8300 -1.7601 30 1 1.7344 -3.0526 0.9996 31 1 0.9610 -2.8646 -0.6331 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825530486.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:29 Heat of formation + Delta-G solvation = -6.394348 kcal Electronic energy + Delta-G solvation = -14139.763504 eV Core-core repulsion = 11808.077594 eV Total energy + Delta-G solvation = -2331.685910 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.73876 -39.10947 -36.79099 -33.88979 -33.26495 -28.65861 -27.43812 -26.33885 -26.27044 -23.25394 -21.22945 -19.82483 -18.26676 -17.32164 -16.39003 -16.30179 -16.06968 -16.02654 -14.98486 -14.59760 -13.99264 -13.54613 -13.46336 -13.26143 -13.16472 -12.84931 -12.76827 -12.62250 -12.42091 -12.32178 -12.04275 -11.70366 -11.19574 -11.09695 -10.36007 -9.98449 -9.44255 -8.24702 -5.90237 1.08279 1.38527 1.44172 1.58086 1.94239 2.27017 3.00752 3.12638 3.68249 3.80620 3.92091 4.32880 4.36465 4.56629 4.71764 4.80339 4.83840 4.84804 4.92493 5.07279 5.07695 5.10055 5.25307 5.34609 5.40675 5.49831 5.51901 5.71759 6.06512 6.41005 7.06506 7.53380 7.93100 8.70705 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.025589 B = 0.013479 C = 0.010856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.964366 B = 2076.823409 C = 2578.577292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.129 4.129 3 C 0.476 3.524 4 O -0.654 6.654 5 N -0.449 5.449 6 C 0.136 3.864 7 C -0.336 4.336 8 H 0.109 0.891 9 C -0.014 4.014 10 N -0.906 5.906 11 Si 0.996 3.004 12 H -0.254 1.254 13 H -0.278 1.278 14 H -0.277 1.277 15 C -0.147 4.147 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.080 4.080 19 H 0.071 0.929 20 H 0.092 0.908 21 H 0.051 0.949 22 H 0.028 0.972 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.269 0.731 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.300 -11.138 0.163 11.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.266 3.734 4 O -0.545 6.545 5 N -0.165 5.165 6 C -0.007 4.007 7 C -0.464 4.464 8 H 0.127 0.873 9 C -0.215 4.215 10 N -0.546 5.546 11 Si 0.819 3.181 12 H -0.177 1.177 13 H -0.204 1.204 14 H -0.203 1.203 15 C -0.148 4.148 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.117 4.117 19 H 0.090 0.910 20 H 0.111 0.889 21 H 0.070 0.930 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.099 -10.691 0.466 11.141 hybrid contribution 0.273 0.655 -0.798 1.068 sum -2.826 -10.037 -0.332 10.432 Atomic orbital electron populations 1.20523 0.88603 1.02990 1.02320 1.20349 0.97137 0.90597 1.05100 1.18728 0.83803 0.87829 0.83008 1.90570 1.66390 1.64110 1.33461 1.43976 1.42068 1.24173 1.06234 1.21335 0.95144 0.87701 0.96530 1.20065 1.37500 1.06244 0.82563 0.87321 1.26284 0.95786 0.96376 1.03016 1.70322 1.35856 1.20269 1.28153 0.84810 0.78181 0.78547 0.76548 1.17712 1.20387 1.20261 1.23284 0.98062 0.94836 0.98662 1.22209 0.93961 0.98206 1.01059 1.22559 0.96686 0.96477 0.99965 1.22147 0.98442 0.88829 1.02277 0.90993 0.88882 0.93000 0.95386 0.92440 0.92806 0.92032 0.94138 0.88716 0.88125 0.90327 0.87031 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.04 10.01 71.24 0.71 -2.32 16 2 C -0.13 -5.56 3.97 -18.73 -0.07 -5.64 16 3 C 0.48 25.50 6.93 86.53 0.60 26.10 16 4 O -0.65 -38.98 16.46 -4.23 -0.07 -39.05 16 5 N -0.45 -24.74 3.02 -663.19 -2.00 -26.74 16 6 C 0.14 7.45 8.86 127.77 1.13 8.58 16 7 C -0.34 -17.67 9.39 84.12 0.79 -16.88 16 8 H 0.11 5.42 6.43 -2.91 -0.02 5.40 16 9 C -0.01 -0.73 5.46 84.96 0.46 -0.27 16 10 N -0.91 -48.54 9.45 21.68 0.20 -48.34 16 11 Si 1.00 39.78 29.56 68.60 2.03 41.81 16 12 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 13 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 14 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 15 C -0.15 -5.41 6.41 -17.16 -0.11 -5.52 16 16 C -0.12 -4.03 7.83 30.06 0.24 -3.79 16 17 C -0.12 -3.03 8.17 30.94 0.25 -2.78 16 18 C -0.08 -2.01 7.63 30.15 0.23 -1.78 16 19 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 20 H 0.09 2.52 7.79 -2.39 -0.02 2.50 16 21 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 22 H 0.03 1.51 6.94 -2.39 -0.02 1.49 16 23 H 0.06 3.18 7.07 -2.39 -0.02 3.16 16 24 H 0.05 3.01 7.03 -2.38 -0.02 2.99 16 25 H 0.27 13.54 8.31 -92.70 -0.77 12.77 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -66.05 263.14 5.50 -60.55 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.11 Total: 16.07 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 4.23 Total: -4.31 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -1.80 Total: -75.07 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.07 Total: -39.05 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -66.05 5.50 -60.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825530486.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.155 kcal (2) G-P(sol) polarization free energy of solvation -66.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds