Wall clock time and date at job start Sun Mar 29 2020 21:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47055 * 281.21185 * 3 2 1 5 5 N 1.46907 * 109.46855 * 179.97438 * 4 3 2 6 6 C 1.48528 * 111.00111 * 287.39512 * 5 4 3 7 7 C 1.55099 * 103.28381 * 200.33449 * 6 5 4 8 8 C 1.54593 * 102.84490 * 37.30637 * 7 6 5 9 9 O 1.42898 * 110.30719 * 97.12142 * 8 7 6 10 10 C 1.50702 * 110.30772 * 219.18689 * 8 7 6 11 11 H 1.08002 * 120.00299 * 117.21456 * 10 8 7 12 12 C 1.37884 * 119.99942 * 296.93014 * 10 8 7 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 8 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 C 1.47903 * 110.99661 * 169.99828 * 5 4 3 19 19 H 4.44650 * 5.63493 * 179.97438 * 4 1 2 20 20 H 1.09000 * 109.47472 * 161.21498 * 3 2 1 21 21 H 1.09007 * 109.47427 * 41.21022 * 3 2 1 22 22 H 1.08997 * 109.47048 * 60.00240 * 4 3 2 23 23 H 1.08993 * 109.46895 * 299.99669 * 4 3 2 24 24 H 1.09001 * 110.66718 * 318.71611 * 6 5 4 25 25 H 1.09006 * 110.66736 * 81.67838 * 6 5 4 26 26 H 1.09001 * 110.71257 * 278.99719 * 7 6 5 27 27 H 1.08998 * 110.81298 * 155.66416 * 7 6 5 28 28 H 0.96691 * 114.00808 * 62.79185 * 9 8 7 29 29 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 30 30 H 1.09001 * 109.91924 * 26.49349 * 18 5 4 31 31 H 1.08997 * 110.08057 * 265.28894 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1561 -0.2796 1.4150 5 7 4.6251 -0.2795 1.4149 6 6 5.1574 -1.4970 0.7511 7 6 6.6066 -1.5947 1.2950 8 6 6.4545 -1.1345 2.7630 9 8 6.3446 -2.2661 3.6287 10 6 7.6279 -0.2797 3.1674 11 1 7.4734 0.7518 3.4478 12 6 8.8980 -0.8161 3.1850 13 7 9.0861 -2.0721 2.8435 14 14 10.3514 0.2413 3.6936 15 1 10.5537 0.1320 5.1607 16 1 11.5730 -0.2246 2.9895 17 1 10.0831 1.6572 3.3351 18 6 5.1552 -0.3085 2.7953 19 1 -1.0500 0.0002 0.0002 20 1 3.0089 0.9737 -0.3309 21 1 3.0097 -0.7723 -0.6771 22 1 2.7932 -1.2527 1.7460 23 1 2.7924 0.4933 2.0920 24 1 4.5799 -2.3756 1.0386 25 1 5.1573 -1.3757 -0.3322 26 1 7.2698 -0.9250 0.7476 27 1 6.9693 -2.6215 1.2483 28 1 7.1261 -2.8354 3.6331 29 1 9.9797 -2.4494 2.8556 30 1 4.4321 -0.7797 3.4610 31 1 5.3678 0.7049 3.1359 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829991566.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:35 Heat of formation + Delta-G solvation = -17.971460 kcal Electronic energy + Delta-G solvation = -13764.890196 eV Core-core repulsion = 11432.702264 eV Total energy + Delta-G solvation = -2332.187932 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.17437 -37.14946 -35.05035 -34.13733 -32.12676 -29.97704 -29.30965 -26.37870 -24.12539 -21.81418 -21.28846 -19.13305 -18.87890 -17.02202 -16.88427 -16.28294 -15.93012 -15.75122 -14.92033 -14.26843 -14.14656 -13.86487 -13.67964 -13.24472 -12.93807 -12.84811 -12.60451 -12.29365 -12.20601 -11.99994 -11.90861 -11.20033 -11.01618 -10.94238 -10.59344 -10.10013 -9.38499 -8.20363 -6.34080 1.42153 1.44030 1.53916 1.86728 1.94626 2.40869 2.96573 3.10684 3.68831 3.90674 4.01196 4.21542 4.31119 4.39818 4.52550 4.56318 4.64831 4.81231 4.95920 5.05864 5.11255 5.19562 5.25706 5.42552 5.61932 5.77693 5.95722 6.14340 6.20745 6.70343 6.72901 7.35638 7.44165 8.85824 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064183 B = 0.007068 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.144619 B = 3960.737951 C = 4060.464085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.219 4.219 3 C -0.001 4.001 4 C 0.055 3.945 5 N -0.516 5.516 6 C 0.039 3.961 7 C -0.110 4.110 8 C 0.224 3.776 9 O -0.603 6.603 10 C -0.555 4.555 11 H 0.054 0.946 12 C 0.028 3.972 13 N -0.915 5.915 14 Si 0.960 3.040 15 H -0.277 1.277 16 H -0.280 1.280 17 H -0.271 1.271 18 C 0.061 3.939 19 H 0.249 0.751 20 H 0.098 0.902 21 H 0.090 0.910 22 H 0.030 0.970 23 H 0.076 0.924 24 H 0.037 0.963 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.377 0.623 29 H 0.269 0.731 30 H 0.033 0.967 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 2.211 -5.092 11.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.220 4.220 3 C -0.038 4.038 4 C -0.073 4.073 5 N -0.240 5.240 6 C -0.089 4.089 7 C -0.149 4.149 8 C 0.184 3.816 9 O -0.412 6.412 10 C -0.593 4.593 11 H 0.072 0.928 12 C -0.172 4.172 13 N -0.555 5.555 14 Si 0.786 3.214 15 H -0.203 1.203 16 H -0.205 1.205 17 H -0.196 1.196 18 C -0.066 4.066 19 H 0.266 0.734 20 H 0.117 0.883 21 H 0.108 0.892 22 H 0.049 0.951 23 H 0.094 0.906 24 H 0.055 0.945 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.227 0.773 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.229 2.820 -5.264 11.845 hybrid contribution 1.136 -0.661 0.743 1.510 sum -9.093 2.158 -4.522 10.382 Atomic orbital electron populations 1.25709 0.96751 1.00216 0.99118 1.23447 0.95131 1.01447 1.01959 1.18535 0.84369 1.04209 0.96680 1.22190 0.87360 1.00351 0.97400 1.64732 1.07473 1.37914 1.13900 1.23323 0.95322 0.90548 0.99665 1.22785 0.94500 0.99683 0.97953 1.19651 0.91736 0.83466 0.86717 1.86082 1.45139 1.40937 1.69074 1.21961 0.92961 0.97832 1.46539 0.92757 1.25696 1.01192 0.96373 0.93953 1.69739 1.23498 1.13840 1.48459 0.85522 0.78527 0.79130 0.78220 1.20307 1.20518 1.19558 1.22676 0.95215 0.99542 0.89203 0.73445 0.88347 0.89177 0.95129 0.90598 0.94504 0.88785 0.93152 0.93157 0.77271 0.92173 0.94870 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.15 19.25 74.32 1.43 -2.71 16 2 C -0.22 -5.50 13.34 31.12 0.42 -5.09 16 3 C 0.00 -0.03 5.79 28.79 0.17 0.14 16 4 C 0.06 1.72 4.66 86.30 0.40 2.12 16 5 N -0.52 -19.53 5.25 -882.67 -4.63 -24.16 16 6 C 0.04 1.47 5.91 86.71 0.51 1.99 16 7 C -0.11 -5.18 5.43 31.86 0.17 -5.00 16 8 C 0.22 11.39 0.99 -10.66 -0.01 11.38 16 9 O -0.60 -32.37 12.92 -148.98 -1.93 -34.30 16 10 C -0.55 -30.42 8.11 25.60 0.21 -30.21 16 11 H 0.05 2.98 7.34 -2.91 -0.02 2.96 16 12 C 0.03 1.49 5.26 84.66 0.45 1.93 16 13 N -0.92 -49.46 10.88 21.45 0.23 -49.23 16 14 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 C 0.06 2.73 6.13 86.44 0.53 3.26 16 19 H 0.25 2.91 7.80 -4.42 -0.03 2.87 16 20 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16 21 H 0.09 2.22 7.36 -2.38 -0.02 2.20 16 22 H 0.03 0.98 7.83 -2.39 -0.02 0.96 16 23 H 0.08 2.28 8.08 -2.39 -0.02 2.26 16 24 H 0.04 1.38 7.81 -2.39 -0.02 1.36 16 25 H 0.09 3.05 7.80 -2.38 -0.02 3.03 16 26 H 0.05 2.50 7.86 -2.39 -0.02 2.48 16 27 H 0.05 2.46 8.02 -2.39 -0.02 2.44 16 28 H 0.38 20.60 7.17 -74.06 -0.53 20.07 16 29 H 0.27 13.81 8.31 -92.70 -0.77 13.04 16 30 H 0.03 1.46 7.59 -2.39 -0.02 1.44 16 31 H 0.07 3.35 7.39 -2.39 -0.02 3.33 16 Total: -1.00 -58.87 263.29 0.55 -58.31 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.58 Total: 26.88 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 4.27 Total: -22.21 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -4.40 Total: -73.39 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -1.93 Total: -34.30 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -58.87 0.55 -58.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991566.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.341 kcal (2) G-P(sol) polarization free energy of solvation -58.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds