Wall clock time and date at job start Sun Mar 29 2020 21:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47155 * 230.39679 * 3 2 1 5 5 N 1.46896 * 109.47261 * 180.02562 * 4 3 2 6 6 C 1.48529 * 111.00073 * 52.60606 * 5 4 3 7 7 C 1.54943 * 103.23110 * 159.72217 * 6 5 4 8 8 C 1.54593 * 102.91873 * 322.58517 * 7 6 5 9 9 O 1.42901 * 110.39196 * 262.99801 * 8 7 6 10 10 C 1.50700 * 110.31274 * 140.87331 * 8 7 6 11 11 H 1.08003 * 119.99940 * 244.28523 * 10 8 7 12 12 C 1.37876 * 119.99963 * 64.27637 * 10 8 7 13 13 N 1.31512 * 119.99843 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 119.99976 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47269 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.46756 * 120.00674 * 14 12 10 17 17 H 1.48501 * 109.47443 * 240.00189 * 14 12 10 18 18 C 1.47906 * 111.00163 * 169.99916 * 5 4 3 19 19 H 4.44648 * 5.63326 * 180.02562 * 4 1 2 20 20 H 1.09002 * 109.47155 * 110.39632 * 3 2 1 21 21 H 1.08997 * 109.47225 * 350.39885 * 3 2 1 22 22 H 1.09002 * 109.47127 * 59.99936 * 4 3 2 23 23 H 1.09006 * 109.46990 * 300.00222 * 4 3 2 24 24 H 1.08995 * 110.67216 * 41.28703 * 6 5 4 25 25 H 1.09004 * 110.80922 * 278.21881 * 6 5 4 26 26 H 1.08999 * 110.72722 * 204.22642 * 7 6 5 27 27 H 1.09004 * 110.87493 * 81.01227 * 7 6 5 28 28 H 0.96699 * 113.99877 * 295.76904 * 9 8 7 29 29 H 0.96999 * 119.99895 * 179.97438 * 13 12 10 30 30 H 1.08998 * 109.91583 * 94.80499 * 18 5 4 31 31 H 1.09004 * 109.91554 * 333.51082 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.9204 1.1114 5 7 4.6245 0.9216 1.1110 6 6 5.1563 1.2342 -0.2402 7 6 6.6039 1.7050 0.0486 8 6 6.4527 2.4989 1.3665 9 8 6.3414 3.8975 1.0953 10 6 7.6266 2.2347 2.2739 11 1 7.4757 1.7390 3.2216 12 6 8.8931 2.6257 1.8943 13 7 9.0766 3.2296 0.7405 14 14 10.3479 2.2989 3.0194 15 1 9.8782 1.6119 4.2492 16 1 11.3330 1.4375 2.3171 17 1 10.9896 3.5871 3.3858 18 6 5.1540 1.9734 2.0059 19 1 -1.0501 -0.0003 -0.0001 20 1 3.0092 0.3590 -0.9632 21 1 3.0098 -1.0124 0.1714 22 1 2.7924 0.5621 2.0746 23 1 2.7917 1.9336 0.9399 24 1 4.5780 2.0320 -0.7061 25 1 5.1596 0.3447 -0.8703 26 1 6.9663 2.3507 -0.7512 27 1 7.2694 0.8527 0.1859 28 1 7.1306 4.2838 0.6916 29 1 9.9676 3.5049 0.4736 30 1 5.3678 1.5522 2.9882 31 1 4.4302 2.7835 2.0958 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829991567.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:36 Heat of formation + Delta-G solvation = -17.357293 kcal Electronic energy + Delta-G solvation = -13793.411191 eV Core-core repulsion = 11461.249892 eV Total energy + Delta-G solvation = -2332.161299 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.22608 -37.20235 -35.01497 -34.12602 -32.13029 -30.07531 -29.24517 -26.33810 -24.29205 -21.70601 -21.29000 -19.14689 -18.84484 -17.01001 -16.93621 -16.47916 -15.88050 -15.65091 -14.97466 -14.30608 -14.11850 -13.88612 -13.68656 -13.23856 -12.94699 -12.76739 -12.57695 -12.28397 -12.26312 -12.04543 -11.89949 -11.21034 -10.99927 -10.98854 -10.60133 -10.09250 -9.37262 -8.21120 -6.34746 1.40691 1.43847 1.54943 1.85913 1.93466 2.40471 2.96370 3.10407 3.66079 3.90114 4.04687 4.16687 4.30586 4.40125 4.48676 4.57289 4.62190 4.82041 4.96067 5.02150 5.11461 5.18182 5.25479 5.41814 5.61677 5.77405 5.95294 6.13719 6.20343 6.69930 6.71892 7.35384 7.45162 8.85377 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.067858 B = 0.007074 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.529440 B = 3957.454699 C = 4036.303220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.220 4.220 3 C -0.007 4.007 4 C 0.055 3.945 5 N -0.516 5.516 6 C 0.039 3.961 7 C -0.113 4.113 8 C 0.224 3.776 9 O -0.604 6.604 10 C -0.554 4.554 11 H 0.054 0.946 12 C 0.027 3.973 13 N -0.916 5.916 14 Si 0.961 3.039 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.279 1.279 18 C 0.061 3.939 19 H 0.250 0.750 20 H 0.090 0.910 21 H 0.101 0.899 22 H 0.080 0.920 23 H 0.027 0.973 24 H 0.038 0.962 25 H 0.096 0.904 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.378 0.622 29 H 0.269 0.731 30 H 0.074 0.926 31 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.934 -5.087 -2.184 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.221 4.221 3 C -0.044 4.044 4 C -0.073 4.073 5 N -0.240 5.240 6 C -0.089 4.089 7 C -0.152 4.152 8 C 0.184 3.816 9 O -0.413 6.413 10 C -0.592 4.592 11 H 0.073 0.927 12 C -0.172 4.172 13 N -0.557 5.557 14 Si 0.787 3.213 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.205 1.205 18 C -0.067 4.067 19 H 0.266 0.734 20 H 0.108 0.892 21 H 0.119 0.881 22 H 0.099 0.901 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.114 0.886 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.229 0.771 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.231 -5.620 -1.851 11.819 hybrid contribution 1.144 0.991 0.029 1.513 sum -9.087 -4.629 -1.822 10.360 Atomic orbital electron populations 1.25720 0.96746 0.99720 0.99395 1.23408 0.95088 1.01714 1.01888 1.18666 0.84723 1.01687 0.99292 1.22231 0.87318 0.97940 0.99799 1.64841 1.07455 1.44561 1.07186 1.23269 0.95139 0.99551 0.90904 1.22780 0.94695 0.99281 0.98421 1.19653 0.91716 0.78586 0.91619 1.86075 1.44303 1.25892 1.85045 1.21997 0.93158 1.39085 1.04968 0.92742 1.25699 1.01206 0.93979 0.96364 1.69703 1.23693 1.40757 1.21522 0.85461 0.78941 0.77867 0.79044 1.19593 1.20307 1.20504 1.22720 0.95337 0.91735 0.96935 0.73386 0.89180 0.88081 0.90133 0.95462 0.94398 0.88577 0.93206 0.93110 0.77126 0.92123 0.90755 0.94836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.10 19.25 74.32 1.43 -2.67 16 2 C -0.22 -5.54 13.34 31.12 0.42 -5.13 16 3 C -0.01 -0.18 5.36 28.79 0.15 -0.03 16 4 C 0.06 1.72 4.98 86.30 0.43 2.15 16 5 N -0.52 -19.58 5.40 -883.00 -4.76 -24.35 16 6 C 0.04 1.46 5.10 86.65 0.44 1.90 16 7 C -0.11 -5.29 5.50 31.80 0.17 -5.11 16 8 C 0.22 11.42 0.99 -10.66 -0.01 11.41 16 9 O -0.60 -32.53 12.93 -148.98 -1.93 -34.46 16 10 C -0.55 -30.42 8.10 25.60 0.21 -30.22 16 11 H 0.05 3.00 7.34 -2.91 -0.02 2.98 16 12 C 0.03 1.46 5.26 84.65 0.45 1.90 16 13 N -0.92 -49.56 10.88 21.45 0.23 -49.32 16 14 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 C 0.06 2.70 6.17 86.45 0.53 3.24 16 19 H 0.25 2.90 7.80 -4.41 -0.03 2.86 16 20 H 0.09 2.26 6.79 -2.39 -0.02 2.24 16 21 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 22 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.03 0.89 7.81 -2.38 -0.02 0.87 16 24 H 0.04 1.40 8.00 -2.39 -0.02 1.38 16 25 H 0.10 3.07 7.67 -2.39 -0.02 3.05 16 26 H 0.05 2.43 8.06 -2.39 -0.02 2.41 16 27 H 0.05 2.51 7.86 -2.39 -0.02 2.49 16 28 H 0.38 20.78 7.05 -74.06 -0.52 20.26 16 29 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 30 H 0.07 3.34 7.39 -2.39 -0.02 3.33 16 31 H 0.03 1.49 7.39 -2.38 -0.02 1.47 16 Total: -1.00 -59.17 261.87 0.38 -58.79 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.59 Total: 27.17 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 4.22 Total: -22.56 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -4.53 Total: -73.67 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -1.93 Total: -34.46 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -59.17 0.38 -58.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829991567.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.433 kcal (2) G-P(sol) polarization free energy of solvation -59.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds