Wall clock time and date at job start Sun Mar 29 2020 21:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47106 * 119.99532 * 2 1 4 4 O 1.21617 * 119.99629 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00040 * 0.02562 * 3 2 1 6 6 C 1.46506 * 119.99969 * 180.02562 * 5 3 2 7 7 C 1.50696 * 109.47148 * 179.72251 * 6 5 3 8 8 H 1.08002 * 120.00318 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99922 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99824 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99920 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.46763 * 60.00502 * 11 9 7 13 13 H 1.48506 * 109.46865 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47267 * 300.00432 * 11 9 7 15 15 C 1.32986 * 120.00329 * 179.97438 * 2 1 3 16 16 C 1.51407 * 136.31548 * 179.62836 * 15 2 1 17 17 C 1.53385 * 87.51751 * 206.06276 * 16 15 2 18 18 C 1.51413 * 136.31796 * 0.02562 * 15 2 1 19 19 H 1.09000 * 109.46981 * 90.00080 * 1 2 3 20 20 H 1.09001 * 109.47106 * 209.99525 * 1 2 3 21 21 H 1.09000 * 109.47455 * 330.00264 * 1 2 3 22 22 H 0.97005 * 120.00161 * 359.72096 * 5 3 2 23 23 H 1.09001 * 109.46512 * 299.72412 * 6 5 3 24 24 H 1.08998 * 109.47174 * 59.71534 * 6 5 3 25 25 H 0.97005 * 119.99648 * 179.97438 * 10 9 7 26 26 H 1.08993 * 113.56307 * 320.64490 * 16 15 2 27 27 H 1.08998 * 113.55925 * 91.38375 * 16 15 2 28 28 H 1.09004 * 113.96422 * 220.29494 * 17 16 15 29 29 H 1.08996 * 113.59956 * 88.79878 * 17 16 15 30 30 H 1.09001 * 113.55355 * 268.61999 * 18 15 2 31 31 H 1.08995 * 113.55880 * 39.35111 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4411 0.0005 6 6 2.3009 3.7100 0.0000 7 6 1.3216 4.8553 -0.0062 8 1 0.2598 4.6579 -0.0097 9 6 1.7811 6.1553 -0.0072 10 7 3.0741 6.3956 -0.0034 11 14 0.5672 7.5750 -0.0155 12 1 -0.2916 7.4991 1.1937 13 1 1.3097 8.8611 -0.0147 14 1 -0.2816 7.4935 -1.2313 15 6 2.1720 -1.1517 0.0005 16 6 3.6251 -1.5769 -0.0061 17 6 3.1710 -2.8819 -0.6720 18 6 1.8140 -2.6228 0.0007 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 0.5985 2.4411 -0.0032 23 1 2.9245 3.7698 0.8920 24 1 2.9307 3.7656 -0.8879 25 1 3.3974 7.3102 -0.0045 26 1 4.2567 -0.9603 -0.6454 27 1 4.0421 -1.7188 0.9910 28 1 3.6837 -3.7697 -0.3017 29 1 3.1401 -2.8287 -1.7602 30 1 1.7339 -3.0515 0.9997 31 1 0.9605 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831280862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:31 Heat of formation + Delta-G solvation = -13.137243 kcal Electronic energy + Delta-G solvation = -13297.359709 eV Core-core repulsion = 10965.381405 eV Total energy + Delta-G solvation = -2331.978304 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.38159 -37.83480 -34.13987 -33.02401 -31.95937 -27.23284 -26.37414 -25.39693 -23.41366 -21.88783 -19.80835 -18.10877 -16.48797 -15.64522 -15.41374 -15.32091 -14.56739 -14.24164 -13.52643 -13.04715 -12.87724 -12.37108 -12.24491 -11.96633 -11.79582 -11.66227 -11.43842 -10.97259 -10.86207 -10.83673 -10.33547 -10.22762 -9.38036 -8.90647 -8.70460 -8.59998 -7.78706 -6.13994 -4.20858 1.74307 3.27014 3.31540 3.33228 3.99350 4.05069 4.36477 4.58389 4.78762 4.87040 5.14494 5.21933 5.35968 5.50311 5.58418 5.70766 5.76280 5.79235 5.89538 6.06272 6.23319 6.32158 6.52749 6.93659 7.37136 7.50011 7.55921 7.71822 8.00427 8.69504 8.82367 9.17639 9.45924 10.96275 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.068771 B = 0.006152 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.052083 B = 4550.551282 C = 4903.835709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.153 4.153 3 C 0.538 3.462 4 O -0.556 6.556 5 N -0.708 5.708 6 C 0.249 3.751 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.064 3.936 10 N -0.886 5.886 11 Si 0.904 3.096 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.275 1.275 15 C -0.090 4.090 16 C -0.099 4.099 17 C -0.142 4.142 18 C -0.103 4.103 19 H 0.069 0.931 20 H 0.064 0.936 21 H 0.069 0.931 22 H 0.390 0.610 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.266 0.734 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.066 -15.144 -0.154 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.156 4.156 3 C 0.324 3.676 4 O -0.437 6.437 5 N -0.357 5.357 6 C 0.129 3.871 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.140 4.140 10 N -0.523 5.523 11 Si 0.731 3.269 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.201 1.201 15 C -0.092 4.092 16 C -0.136 4.136 17 C -0.179 4.179 18 C -0.140 4.140 19 H 0.087 0.913 20 H 0.083 0.917 21 H 0.088 0.912 22 H 0.224 0.776 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.055 -14.928 -0.152 15.469 hybrid contribution -1.086 0.934 -0.018 1.432 sum -5.141 -13.994 -0.170 14.910 Atomic orbital electron populations 1.20679 0.90995 1.02681 1.02249 1.20747 0.95713 0.92198 1.06944 1.18226 0.87393 0.84013 0.77945 1.90717 1.13595 1.87859 1.51510 1.46424 1.10229 1.06982 1.72018 1.19101 0.92389 0.77911 0.97729 1.21197 0.92934 0.90785 1.53251 0.91981 1.24951 0.95407 0.98924 0.94706 1.69971 1.12605 1.20881 1.48889 0.86472 0.80735 0.80995 0.78684 1.20065 1.21063 1.20064 1.23060 0.97840 0.93336 0.94974 1.22096 0.94480 0.95492 1.01555 1.22704 0.96796 0.98169 1.00260 1.22227 0.98188 0.92286 1.01280 0.91275 0.91684 0.91224 0.77603 0.95513 0.95530 0.92413 0.89680 0.88982 0.90860 0.89991 0.88753 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.57 36.01 0.34 -1.04 16 2 C -0.15 -2.54 6.00 -102.85 -0.62 -3.16 16 3 C 0.54 11.66 7.75 -12.66 -0.10 11.57 16 4 O -0.56 -14.02 15.15 5.26 0.08 -13.94 16 5 N -0.71 -15.83 5.49 -62.67 -0.34 -16.18 16 6 C 0.25 6.84 5.43 -5.19 -0.03 6.81 16 7 C -0.54 -15.06 9.28 -34.44 -0.32 -15.37 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 11 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 15 C -0.09 -1.34 6.60 -100.48 -0.66 -2.00 16 16 C -0.10 -1.41 6.99 -27.55 -0.19 -1.61 16 17 C -0.14 -1.51 8.17 -26.20 -0.21 -1.72 16 18 C -0.10 -1.09 7.71 -27.41 -0.21 -1.31 16 19 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 20 H 0.06 0.69 7.91 -51.93 -0.41 0.27 16 21 H 0.07 0.87 6.71 -51.93 -0.35 0.52 16 22 H 0.39 7.54 6.42 -40.82 -0.26 7.27 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.08 1.41 7.49 -51.93 -0.39 1.02 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 267.30 15.07 4.03 4.03 Total: -1.00 -32.19 267.30 -6.94 -39.13 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.33 Total: 2.79 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.10 Total: -6.13 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.39 Total: -41.91 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.08 Total: -13.94 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.19 -6.94 -39.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831280862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.992 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds