Wall clock time and date at job start Sun Mar 29 2020 21:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47106 * 119.99532 * 2 1 4 4 O 1.21617 * 119.99629 * 179.97438 * 3 2 1 5 5 N 1.34773 * 120.00040 * 0.02562 * 3 2 1 6 6 C 1.46506 * 119.99969 * 180.02562 * 5 3 2 7 7 C 1.50696 * 109.47148 * 179.72251 * 6 5 3 8 8 H 1.08002 * 120.00318 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99922 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99824 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99920 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.46763 * 60.00502 * 11 9 7 13 13 H 1.48506 * 109.46865 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47267 * 300.00432 * 11 9 7 15 15 C 1.32986 * 120.00329 * 179.97438 * 2 1 3 16 16 C 1.51407 * 136.31548 * 179.62836 * 15 2 1 17 17 C 1.53385 * 87.51751 * 206.06276 * 16 15 2 18 18 C 1.51413 * 136.31796 * 0.02562 * 15 2 1 19 19 H 1.09000 * 109.46981 * 90.00080 * 1 2 3 20 20 H 1.09001 * 109.47106 * 209.99525 * 1 2 3 21 21 H 1.09000 * 109.47455 * 330.00264 * 1 2 3 22 22 H 0.97005 * 120.00161 * 359.72096 * 5 3 2 23 23 H 1.09001 * 109.46512 * 299.72412 * 6 5 3 24 24 H 1.08998 * 109.47174 * 59.71534 * 6 5 3 25 25 H 0.97005 * 119.99648 * 179.97438 * 10 9 7 26 26 H 1.08993 * 113.56307 * 320.64490 * 16 15 2 27 27 H 1.08998 * 113.55925 * 91.38375 * 16 15 2 28 28 H 1.09004 * 113.96422 * 220.29494 * 17 16 15 29 29 H 1.08996 * 113.59956 * 88.79878 * 17 16 15 30 30 H 1.09001 * 113.55355 * 268.61999 * 18 15 2 31 31 H 1.08995 * 113.55880 * 39.35111 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2741 0.0005 5 7 1.5685 2.4411 0.0005 6 6 2.3009 3.7100 0.0000 7 6 1.3216 4.8553 -0.0062 8 1 0.2598 4.6579 -0.0097 9 6 1.7811 6.1553 -0.0072 10 7 3.0741 6.3956 -0.0034 11 14 0.5672 7.5750 -0.0155 12 1 -0.2916 7.4991 1.1937 13 1 1.3097 8.8611 -0.0147 14 1 -0.2816 7.4935 -1.2313 15 6 2.1720 -1.1517 0.0005 16 6 3.6251 -1.5769 -0.0061 17 6 3.1710 -2.8819 -0.6720 18 6 1.8140 -2.6228 0.0007 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 0.5985 2.4411 -0.0032 23 1 2.9245 3.7698 0.8920 24 1 2.9307 3.7656 -0.8879 25 1 3.3974 7.3102 -0.0045 26 1 4.2567 -0.9603 -0.6454 27 1 4.0421 -1.7188 0.9910 28 1 3.6837 -3.7697 -0.3017 29 1 3.1401 -2.8287 -1.7602 30 1 1.7339 -3.0515 0.9997 31 1 0.9605 -2.8636 -0.6331 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831280862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:30 Heat of formation + Delta-G solvation = -35.182993 kcal Electronic energy + Delta-G solvation = -13298.315684 eV Core-core repulsion = 10965.381405 eV Total energy + Delta-G solvation = -2332.934280 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.87114 -39.18370 -36.16231 -34.66837 -33.63966 -29.31874 -27.42313 -26.39663 -25.26465 -23.39918 -21.37960 -19.73297 -18.16919 -17.25758 -17.11348 -16.50877 -16.33673 -15.93652 -14.97069 -14.64401 -14.21205 -14.02288 -13.67087 -13.29523 -13.24887 -12.98003 -12.80078 -12.68739 -12.43998 -12.23616 -11.84792 -11.54134 -11.36453 -10.80926 -10.57866 -10.00050 -9.62774 -8.30647 -6.48250 0.42667 1.42160 1.47054 1.55302 2.31318 2.35066 2.56504 3.03962 3.52353 3.63206 3.85331 4.08153 4.26955 4.46194 4.74670 4.76874 4.81478 4.85436 5.02730 5.05092 5.09022 5.11973 5.19626 5.39338 5.40014 5.46354 5.65006 5.80550 5.85565 6.61960 6.90885 7.21003 7.46393 8.81686 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.068771 B = 0.006152 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.052083 B = 4550.551282 C = 4903.835709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.180 4.180 3 C 0.528 3.472 4 O -0.604 6.604 5 N -0.704 5.704 6 C 0.266 3.734 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.004 3.996 10 N -0.932 5.932 11 Si 0.988 3.012 12 H -0.261 1.261 13 H -0.284 1.284 14 H -0.261 1.261 15 C -0.086 4.086 16 C -0.122 4.122 17 C -0.127 4.127 18 C -0.084 4.084 19 H 0.080 0.920 20 H 0.094 0.906 21 H 0.065 0.935 22 H 0.407 0.593 23 H -0.014 1.014 24 H -0.014 1.014 25 H 0.270 0.730 26 H 0.048 0.952 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.869 -16.801 -0.067 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.183 4.183 3 C 0.318 3.682 4 O -0.488 6.488 5 N -0.354 5.354 6 C 0.144 3.856 7 C -0.597 4.597 8 H 0.102 0.898 9 C -0.196 4.196 10 N -0.570 5.570 11 Si 0.811 3.189 12 H -0.185 1.185 13 H -0.209 1.209 14 H -0.186 1.186 15 C -0.088 4.088 16 C -0.158 4.158 17 C -0.164 4.164 18 C -0.120 4.120 19 H 0.099 0.901 20 H 0.113 0.887 21 H 0.084 0.916 22 H 0.244 0.756 23 H 0.004 0.996 24 H 0.004 0.996 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.903 -16.624 -0.067 18.001 hybrid contribution -0.054 1.352 -0.043 1.354 sum -6.958 -15.272 -0.110 16.782 Atomic orbital electron populations 1.20702 0.87712 1.03960 1.03409 1.20644 0.97710 0.89604 1.10370 1.19233 0.87212 0.85559 0.76165 1.90683 1.15976 1.88695 1.53495 1.46164 1.10870 1.05777 1.72547 1.18552 0.92283 0.80864 0.93944 1.21576 0.93798 0.90989 1.53288 0.89822 1.26114 0.97482 1.02350 0.93646 1.70144 1.15279 1.21817 1.49782 0.85158 0.77874 0.76298 0.79579 1.18536 1.20939 1.18553 1.23739 0.98506 0.95447 0.91152 1.22324 0.94077 0.97678 1.01767 1.22685 0.96706 0.96773 1.00233 1.22306 0.98833 0.87784 1.03086 0.90103 0.88730 0.91583 0.75612 0.99580 0.99644 0.92172 0.93359 0.88433 0.88077 0.89818 0.86189 0.88456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.30 9.57 71.24 0.68 -1.62 16 2 C -0.18 -5.87 6.00 -18.70 -0.11 -5.98 16 3 C 0.53 23.91 7.75 86.57 0.67 24.58 16 4 O -0.60 -32.64 15.15 -4.09 -0.06 -32.70 16 5 N -0.70 -32.68 5.49 -470.44 -2.58 -35.26 16 6 C 0.27 15.47 5.43 85.63 0.46 15.94 16 7 C -0.56 -31.51 9.28 25.60 0.24 -31.27 16 8 H 0.08 4.25 7.60 -2.91 -0.02 4.22 16 9 C 0.00 0.21 5.46 84.66 0.46 0.67 16 10 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 11 Si 0.99 42.97 29.54 68.60 2.03 45.00 16 12 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 13 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 15 C -0.09 -2.43 6.60 -17.17 -0.11 -2.54 16 16 C -0.12 -3.42 6.99 30.06 0.21 -3.21 16 17 C -0.13 -2.30 8.17 30.94 0.25 -2.05 16 18 C -0.08 -1.41 7.71 30.16 0.23 -1.18 16 19 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 20 H 0.09 1.59 7.91 -2.39 -0.02 1.57 16 21 H 0.07 1.52 6.71 -2.39 -0.02 1.51 16 22 H 0.41 15.81 6.42 -92.70 -0.60 15.22 16 23 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 24 H -0.01 -0.94 8.14 -2.39 -0.02 -0.95 16 25 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 26 H 0.05 1.70 7.49 -2.39 -0.02 1.68 16 27 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -74.69 267.30 3.18 -71.51 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.52 Total: 15.35 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 2.99 Total: -6.65 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -2.30 Total: -92.51 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.06 Total: -32.70 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -74.69 3.18 -71.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831280862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.331 kcal (2) G-P(sol) polarization free energy of solvation -74.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds