Wall clock time and date at job start Sun Mar 29 2020 21:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09003 * 109.46822 * 214.21324 * 3 2 1 5 5 N 1.46895 * 109.47114 * 94.21187 * 3 2 1 6 6 C 1.46904 * 111.00014 * 85.00062 * 5 3 2 7 7 C 1.50701 * 109.47195 * 180.02562 * 6 5 3 8 8 H 1.08002 * 119.99761 * 359.97438 * 7 6 5 9 9 C 1.37871 * 119.99694 * 180.27796 * 7 6 5 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 6 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 6 12 12 H 1.48504 * 109.47209 * 89.99886 * 11 9 7 13 13 H 1.48501 * 109.47358 * 209.99377 * 11 9 7 14 14 H 1.48496 * 109.47341 * 329.99989 * 11 9 7 15 15 C 1.52998 * 109.47061 * 334.21056 * 3 2 1 16 16 H 1.08999 * 110.33845 * 302.25264 * 15 3 2 17 17 C 1.54475 * 110.37452 * 179.97438 * 15 3 2 18 18 C 1.54504 * 104.07070 * 217.19240 * 17 15 3 19 19 C 1.54484 * 104.05865 * 0.02562 * 18 17 15 20 20 O 1.44424 * 104.80508 * 23.97984 * 19 18 17 21 21 H 4.18743 * 15.03847 * 359.97438 * 4 2 1 22 22 H 1.00903 * 111.00189 * 321.04798 * 5 3 2 23 23 H 1.09000 * 109.47038 * 59.99386 * 6 5 3 24 24 H 1.09007 * 109.46566 * 299.99918 * 6 5 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 26 26 H 1.09007 * 110.51329 * 335.84042 * 17 15 3 27 27 H 1.09004 * 110.51400 * 98.54139 * 17 15 3 28 28 H 1.08996 * 110.51271 * 118.64196 * 18 17 15 29 29 H 1.08991 * 110.51608 * 241.22007 * 18 17 15 30 30 H 1.09005 * 110.37339 * 142.81217 * 19 18 17 31 31 H 1.08996 * 110.37287 * 265.03396 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0090 0.8507 0.5779 5 7 3.1357 0.1026 -1.3812 6 6 3.1979 1.5046 -1.8156 7 6 3.7027 1.5690 -3.2341 8 1 3.9528 0.6595 -3.7601 9 6 3.8512 2.7895 -3.8580 10 7 3.5470 3.8970 -3.2174 11 14 4.4844 2.8699 -5.6136 12 1 3.3388 2.8069 -6.5564 13 1 5.2223 4.1426 -5.8159 14 1 5.3953 1.7242 -5.8643 15 6 3.1566 -1.2979 0.6276 16 1 2.7687 -1.4073 1.6403 17 6 4.7012 -1.3195 0.6376 18 6 5.0582 -2.7937 0.3439 19 6 3.6870 -3.4885 0.1905 20 8 2.7774 -2.4311 -0.1842 21 1 -1.0500 -0.0005 -0.0009 22 1 2.5658 -0.4453 -2.0083 23 1 3.8739 2.0574 -1.1633 24 1 2.2022 1.9453 -1.7643 25 1 3.6519 4.7556 -3.6563 26 1 5.0974 -0.6681 -0.1415 27 1 5.0811 -1.0219 1.6150 28 1 5.6307 -2.8712 -0.5804 29 1 5.6165 -3.2244 1.1750 30 1 3.7309 -4.2462 -0.5919 31 1 3.3812 -3.9373 1.1355 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839563567.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:08 Heat of formation + Delta-G solvation = -16.484771 kcal Electronic energy + Delta-G solvation = -13611.622441 eV Core-core repulsion = 11279.498977 eV Total energy + Delta-G solvation = -2332.123464 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.45904 -37.49066 -34.98131 -33.17106 -32.80601 -31.02838 -28.36022 -26.09135 -23.73892 -22.79738 -21.76070 -19.45951 -18.51811 -17.25346 -16.91617 -16.54063 -16.30373 -16.02207 -14.92386 -14.57478 -14.49827 -13.96387 -13.77720 -13.24404 -12.78954 -12.60997 -12.48088 -12.31599 -12.09258 -12.04832 -11.49937 -11.42225 -11.35123 -11.00850 -10.68457 -10.55785 -9.27006 -8.23481 -6.34545 1.40364 1.42009 1.53979 1.83664 1.89410 2.39769 3.04530 3.09924 3.37963 3.53077 3.91203 4.07708 4.14450 4.36325 4.37300 4.53495 4.68059 4.86901 4.94338 5.02493 5.06682 5.12093 5.24122 5.26561 5.48215 5.59018 5.96790 6.04603 6.38055 6.60335 6.69364 6.84512 7.35897 8.88233 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.033300 B = 0.008225 C = 0.007223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.639052 B = 3403.472479 C = 3875.554388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.241 4.241 3 C 0.188 3.812 4 H 0.097 0.903 5 N -0.654 5.654 6 C 0.209 3.791 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.002 3.998 10 N -0.933 5.933 11 Si 0.973 3.027 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.264 1.264 15 C 0.099 3.901 16 H 0.083 0.917 17 C -0.146 4.146 18 C -0.144 4.144 19 C 0.039 3.961 20 O -0.390 6.390 21 H 0.249 0.751 22 H 0.336 0.664 23 H 0.008 0.992 24 H -0.043 1.043 25 H 0.265 0.735 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -12.090 8.457 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.243 4.243 3 C 0.078 3.922 4 H 0.114 0.886 5 N -0.282 5.282 6 C 0.081 3.919 7 C -0.573 4.573 8 H 0.081 0.919 9 C -0.196 4.196 10 N -0.573 5.573 11 Si 0.797 3.203 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.188 1.188 15 C 0.041 3.959 16 H 0.100 0.900 17 C -0.184 4.184 18 C -0.182 4.182 19 C -0.037 4.037 20 O -0.310 6.310 21 H 0.265 0.735 22 H 0.153 0.847 23 H 0.026 0.974 24 H -0.025 1.025 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.727 -11.935 8.454 14.644 hybrid contribution -0.844 0.793 -0.833 1.427 sum -0.117 -11.142 7.621 13.500 Atomic orbital electron populations 1.25731 0.96811 1.00235 0.98854 1.24720 0.96448 1.01030 1.02125 1.18957 0.82382 0.97918 0.92939 0.88562 1.60803 1.54391 1.11859 1.01173 1.19280 0.92908 0.84478 0.95205 1.21495 1.43938 0.93077 0.98798 0.91918 1.25937 0.95571 0.95042 1.03044 1.70088 1.49597 0.98313 1.39318 0.85329 0.78521 0.77802 0.78626 1.19900 1.20469 1.18812 1.22963 0.94953 0.84700 0.93244 0.89961 1.22892 0.94096 0.98205 1.03179 1.22862 0.97864 0.94400 1.03085 1.23560 0.88244 0.90668 1.01212 1.89149 1.56331 1.22358 1.63146 0.73501 0.84711 0.97440 1.02545 0.92575 0.91231 0.89131 0.91451 0.88367 0.88695 0.90875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.59 19.25 74.32 1.43 -5.15 16 2 C -0.24 -9.28 12.13 31.13 0.38 -8.90 16 3 C 0.19 7.24 2.30 43.11 0.10 7.34 16 4 H 0.10 3.72 7.80 -2.39 -0.02 3.71 16 5 N -0.65 -29.79 5.14 -505.02 -2.60 -32.39 16 6 C 0.21 11.53 5.23 85.56 0.45 11.98 16 7 C -0.53 -31.29 9.32 25.60 0.24 -31.05 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 9 C 0.00 0.13 5.46 84.65 0.46 0.60 16 10 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 11 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 14 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 15 C 0.10 3.09 3.04 31.10 0.09 3.18 16 16 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 17 C -0.15 -4.04 6.53 31.61 0.21 -3.84 16 18 C -0.14 -3.26 7.09 31.61 0.22 -3.03 16 19 C 0.04 0.93 7.63 72.49 0.55 1.48 16 20 O -0.39 -12.84 10.89 -148.98 -1.62 -14.46 16 21 H 0.25 5.78 7.80 -4.42 -0.03 5.75 16 22 H 0.34 15.77 8.43 -89.69 -0.76 15.02 16 23 H 0.01 0.44 8.06 -2.39 -0.02 0.42 16 24 H -0.04 -2.61 7.98 -2.38 -0.02 -2.63 16 25 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.07 2.41 7.20 -2.38 -0.02 2.39 16 27 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -67.63 270.39 2.57 -65.06 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.35 Total: 19.00 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 4.13 Total: -27.39 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -2.31 Total: -89.26 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -1.62 Total: -14.46 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.63 2.57 -65.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839563567.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.576 kcal (2) G-P(sol) polarization free energy of solvation -67.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds