Wall clock time and date at job start Sun Mar 29 2020 21:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 5 5 N 1.46898 * 109.47047 * 10.25999 * 3 2 1 6 6 C 1.46899 * 111.00287 * 274.99921 * 5 3 2 7 7 C 1.50696 * 109.47315 * 180.02562 * 6 5 3 8 8 H 1.08001 * 119.99941 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00164 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99714 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00325 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46920 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47247 * 119.99723 * 11 9 7 14 14 H 1.48497 * 109.46912 * 239.99808 * 11 9 7 15 15 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 16 16 H 1.08991 * 109.82199 * 185.56389 * 15 3 2 17 17 C 1.54384 * 109.82778 * 64.58709 * 15 3 2 18 18 C 1.55306 * 102.25406 * 219.13092 * 17 15 3 19 19 C 1.54946 * 100.94209 * 34.13345 * 18 17 15 20 20 O 1.43233 * 109.83239 * 306.45966 * 15 3 2 21 21 H 4.18740 * 15.03805 * 359.97438 * 4 2 1 22 22 H 1.00901 * 111.00448 * 38.95656 * 5 3 2 23 23 H 1.09003 * 109.46885 * 299.99985 * 6 5 3 24 24 H 1.08998 * 109.46804 * 59.99764 * 6 5 3 25 25 H 0.97005 * 119.99981 * 180.02562 * 10 9 7 26 26 H 1.09004 * 110.84823 * 337.32093 * 17 15 3 27 27 H 1.08998 * 110.84835 * 100.93791 * 17 15 3 28 28 H 1.09007 * 111.12108 * 276.21497 * 18 17 15 29 29 H 1.09002 * 111.12430 * 152.05594 * 18 17 15 30 30 H 1.09003 * 110.30871 * 204.64496 * 19 18 17 31 31 H 1.08995 * 110.39329 * 82.51281 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3479 0.9672 5 7 3.1362 -1.3619 -0.2467 6 6 3.1994 -2.1329 1.0021 7 6 3.7060 -3.5218 0.7100 8 1 3.9565 -3.8034 -0.3021 9 6 3.8498 -4.4329 1.7348 10 7 3.5453 -4.0897 2.9673 11 14 4.4786 -6.1543 1.3729 12 1 4.7480 -6.2872 -0.0814 13 1 5.7317 -6.3936 2.1329 14 1 3.4552 -7.1506 1.7793 15 6 3.1555 0.9331 -1.1009 16 1 4.2409 0.8631 -1.1714 17 6 2.7418 2.3873 -0.7884 18 6 2.3685 2.9329 -2.1937 19 6 1.7707 1.6643 -2.8525 20 8 2.5628 0.5744 -2.3545 21 1 -1.0500 0.0004 -0.0005 22 1 2.5664 -1.8325 -0.9337 23 1 3.8756 -1.6392 1.7001 24 1 2.2041 -2.1939 1.4422 25 1 3.6468 -4.7306 3.6884 26 1 1.8799 2.4107 -0.1216 27 1 3.5766 2.9456 -0.3647 28 1 3.2537 3.2744 -2.7305 29 1 1.6244 3.7262 -2.1222 30 1 1.8530 1.7269 -3.9376 31 1 0.7284 1.5393 -2.5593 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839563569.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:11 Heat of formation + Delta-G solvation = 4.450837 kcal Electronic energy + Delta-G solvation = -13552.574489 eV Core-core repulsion = 11221.358861 eV Total energy + Delta-G solvation = -2331.215628 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.46419 -35.80309 -32.94925 -31.97390 -31.40907 -29.73868 -26.69838 -24.30095 -21.91450 -21.25949 -21.13369 -18.03742 -16.64805 -16.33241 -15.70797 -14.77459 -14.43817 -14.41729 -13.74427 -13.18643 -13.01434 -12.30366 -11.96329 -11.66479 -11.38026 -11.22810 -11.09627 -10.80784 -10.79983 -10.61310 -10.21806 -9.97928 -9.78209 -9.28113 -8.97128 -8.48299 -7.40390 -6.01279 -4.02923 3.26338 3.29057 3.33446 3.40341 3.46569 4.04271 4.45690 4.55557 4.77155 4.85558 4.94044 5.24991 5.34981 5.38900 5.62904 5.72970 5.76620 5.84055 5.88409 5.99858 6.08045 6.21903 6.47768 7.21220 7.32094 7.44719 7.79609 8.05783 8.12705 8.37878 8.59520 9.06468 9.61759 11.10015 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.054293 B = 0.006783 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.600312 B = 4126.764977 C = 4264.260256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.180 4.180 3 C 0.176 3.824 4 H 0.099 0.901 5 N -0.667 5.667 6 C 0.190 3.810 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.900 3.100 12 H -0.271 1.271 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.099 3.901 16 H 0.095 0.905 17 C -0.154 4.154 18 C -0.154 4.154 19 C 0.050 3.950 20 O -0.366 6.366 21 H 0.209 0.791 22 H 0.340 0.660 23 H 0.029 0.971 24 H -0.011 1.011 25 H 0.261 0.739 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 13.120 -7.730 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.182 4.182 3 C 0.065 3.935 4 H 0.117 0.883 5 N -0.296 5.296 6 C 0.063 3.937 7 C -0.551 4.551 8 H 0.082 0.918 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.728 3.272 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.211 1.211 15 C 0.041 3.959 16 H 0.113 0.887 17 C -0.192 4.192 18 C -0.192 4.192 19 C -0.027 4.027 20 O -0.285 6.285 21 H 0.226 0.774 22 H 0.158 0.842 23 H 0.047 0.953 24 H 0.007 0.993 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.906 12.997 -7.619 15.344 hybrid contribution -0.991 -0.945 0.343 1.412 sum -3.897 12.052 -7.276 14.608 Atomic orbital electron populations 1.24753 0.95793 1.01681 1.02660 1.24429 0.95596 0.99467 0.98701 1.19326 0.81893 0.93971 0.98273 0.88315 1.60957 1.53870 1.00643 1.14112 1.19674 0.95497 0.92638 0.85867 1.21215 1.43323 0.96039 0.94544 0.91790 1.24990 0.95647 0.99009 0.94955 1.69980 1.48972 1.35329 0.99534 0.86411 0.78385 0.83951 0.78502 1.19591 1.20973 1.21118 1.22851 0.98106 0.91465 0.83461 0.88708 1.23222 1.02482 0.95826 0.97644 1.23228 1.01443 0.98349 0.96164 1.23324 0.95170 0.85667 0.98561 1.88500 1.65803 1.38090 1.36088 0.77380 0.84207 0.95287 0.99291 0.92985 0.90380 0.89973 0.90517 0.90420 0.90324 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.82 19.25 29.55 0.57 -3.25 16 2 C -0.18 -3.33 10.59 -37.12 -0.39 -3.73 16 3 C 0.18 3.31 2.34 -70.50 -0.17 3.14 16 4 H 0.10 1.84 7.80 -51.93 -0.40 1.44 16 5 N -0.67 -15.15 6.20 -110.98 -0.69 -15.83 16 6 C 0.19 5.13 5.23 -4.98 -0.03 5.10 16 7 C -0.51 -14.94 9.32 -34.44 -0.32 -15.26 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.43 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 11 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.10 1.56 3.46 -26.00 -0.09 1.47 16 16 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 17 C -0.15 -1.85 6.36 -24.78 -0.16 -2.01 16 18 C -0.15 -1.60 7.16 -24.48 -0.18 -1.77 16 19 C 0.05 0.62 7.70 38.18 0.29 0.92 16 20 O -0.37 -6.08 10.44 -35.23 -0.37 -6.44 16 21 H 0.21 2.64 7.80 -54.09 -0.42 2.22 16 22 H 0.34 7.88 8.45 -39.29 -0.33 7.55 16 23 H 0.03 0.82 8.06 -51.93 -0.42 0.41 16 24 H -0.01 -0.31 7.98 -51.93 -0.41 -0.73 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.08 0.98 7.01 -51.93 -0.36 0.61 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 269.73 15.07 4.06 4.06 Total: -1.00 -31.69 269.73 -6.27 -37.96 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.44 Total: 3.62 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -0.56 Total: -13.88 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.05 Total: -42.42 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.37 Total: -6.44 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.69 -6.27 -37.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839563569.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.413 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds