Wall clock time and date at job start Sun Mar 29 2020 21:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 5 5 N 1.46898 * 109.47047 * 10.25999 * 3 2 1 6 6 C 1.46899 * 111.00287 * 274.99921 * 5 3 2 7 7 C 1.50696 * 109.47315 * 180.02562 * 6 5 3 8 8 H 1.08001 * 119.99941 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00164 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99714 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00325 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.46920 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47247 * 119.99723 * 11 9 7 14 14 H 1.48497 * 109.46912 * 239.99808 * 11 9 7 15 15 C 1.53002 * 109.47021 * 130.25800 * 3 2 1 16 16 H 1.08991 * 109.82199 * 185.56389 * 15 3 2 17 17 C 1.54384 * 109.82778 * 64.58709 * 15 3 2 18 18 C 1.55306 * 102.25406 * 219.13092 * 17 15 3 19 19 C 1.54946 * 100.94209 * 34.13345 * 18 17 15 20 20 O 1.43233 * 109.83239 * 306.45966 * 15 3 2 21 21 H 4.18740 * 15.03805 * 359.97438 * 4 2 1 22 22 H 1.00901 * 111.00448 * 38.95656 * 5 3 2 23 23 H 1.09003 * 109.46885 * 299.99985 * 6 5 3 24 24 H 1.08998 * 109.46804 * 59.99764 * 6 5 3 25 25 H 0.97005 * 119.99981 * 180.02562 * 10 9 7 26 26 H 1.09004 * 110.84823 * 337.32093 * 17 15 3 27 27 H 1.08998 * 110.84835 * 100.93791 * 17 15 3 28 28 H 1.09007 * 111.12108 * 276.21497 * 18 17 15 29 29 H 1.09002 * 111.12430 * 152.05594 * 18 17 15 30 30 H 1.09003 * 110.30871 * 204.64496 * 19 18 17 31 31 H 1.08995 * 110.39329 * 82.51281 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3479 0.9672 5 7 3.1362 -1.3619 -0.2467 6 6 3.1994 -2.1329 1.0021 7 6 3.7060 -3.5218 0.7100 8 1 3.9565 -3.8034 -0.3021 9 6 3.8498 -4.4329 1.7348 10 7 3.5453 -4.0897 2.9673 11 14 4.4786 -6.1543 1.3729 12 1 4.7480 -6.2872 -0.0814 13 1 5.7317 -6.3936 2.1329 14 1 3.4552 -7.1506 1.7793 15 6 3.1555 0.9331 -1.1009 16 1 4.2409 0.8631 -1.1714 17 6 2.7418 2.3873 -0.7884 18 6 2.3685 2.9329 -2.1937 19 6 1.7707 1.6643 -2.8525 20 8 2.5628 0.5744 -2.3545 21 1 -1.0500 0.0004 -0.0005 22 1 2.5664 -1.8325 -0.9337 23 1 3.8756 -1.6392 1.7001 24 1 2.2041 -2.1939 1.4422 25 1 3.6468 -4.7306 3.6884 26 1 1.8799 2.4107 -0.1216 27 1 3.5766 2.9456 -0.3647 28 1 3.2537 3.2744 -2.7305 29 1 1.6244 3.7262 -2.1222 30 1 1.8530 1.7269 -3.9376 31 1 0.7284 1.5393 -2.5593 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839563569.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:11 Heat of formation + Delta-G solvation = -18.066605 kcal Electronic energy + Delta-G solvation = -13553.550919 eV Core-core repulsion = 11221.358861 eV Total energy + Delta-G solvation = -2332.192057 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.63308 -37.45984 -34.97022 -33.26748 -32.83785 -31.12489 -28.51967 -25.90003 -23.68044 -22.51766 -22.32908 -19.53527 -18.45516 -17.68437 -16.91248 -16.64790 -16.11017 -15.74115 -15.32548 -14.50614 -14.32067 -14.18101 -13.53660 -13.28964 -12.91565 -12.73704 -12.59454 -12.26933 -12.10695 -12.04194 -11.73375 -11.48777 -11.33885 -11.22110 -10.70193 -10.32646 -9.29512 -8.25080 -6.36572 1.40116 1.40928 1.55443 1.85051 1.90821 2.39371 2.97240 3.08212 3.35188 3.52669 3.69211 4.01845 4.12199 4.30170 4.37374 4.49273 4.70598 4.85508 4.90042 4.94735 4.99681 5.02844 5.15533 5.22566 5.32201 5.58039 5.96431 6.18659 6.37031 6.59791 6.69692 6.82605 7.34179 8.86979 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.054293 B = 0.006783 C = 0.006565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.600312 B = 4126.764977 C = 4264.260256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.227 4.227 3 C 0.173 3.827 4 H 0.090 0.910 5 N -0.667 5.667 6 C 0.208 3.792 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.976 3.024 12 H -0.264 1.264 13 H -0.274 1.274 14 H -0.277 1.277 15 C 0.102 3.898 16 H 0.089 0.911 17 C -0.148 4.148 18 C -0.141 4.141 19 C 0.039 3.961 20 O -0.394 6.394 21 H 0.247 0.753 22 H 0.336 0.664 23 H 0.006 0.994 24 H -0.042 1.042 25 H 0.266 0.734 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.011 13.615 -8.744 16.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.229 4.229 3 C 0.063 3.937 4 H 0.108 0.892 5 N -0.294 5.294 6 C 0.081 3.919 7 C -0.576 4.576 8 H 0.081 0.919 9 C -0.196 4.196 10 N -0.574 5.574 11 Si 0.800 3.200 12 H -0.188 1.188 13 H -0.200 1.200 14 H -0.202 1.202 15 C 0.044 3.956 16 H 0.106 0.894 17 C -0.186 4.186 18 C -0.179 4.179 19 C -0.037 4.037 20 O -0.314 6.314 21 H 0.263 0.737 22 H 0.153 0.847 23 H 0.024 0.976 24 H -0.024 1.024 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.120 0.880 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.274 13.524 -8.647 16.382 hybrid contribution -0.963 -1.040 0.653 1.561 sum -4.237 12.483 -7.994 15.417 Atomic orbital electron populations 1.25650 0.96684 0.99262 1.00608 1.24484 0.96068 1.01637 1.00688 1.19395 0.82865 0.92087 0.99388 0.89200 1.60854 1.54754 1.01966 1.11867 1.19281 0.92932 0.92619 0.87086 1.21548 1.44032 0.97292 0.94723 0.91944 1.25969 0.95447 1.03642 0.94569 1.70099 1.49574 1.37101 1.00596 0.85240 0.78008 0.78089 0.78682 1.18804 1.19990 1.20215 1.22772 0.97547 0.92850 0.82473 0.89352 1.23196 1.02992 0.93456 0.98927 1.23219 1.02502 0.97761 0.94400 1.23569 0.94638 0.85767 0.99703 1.88465 1.66388 1.40348 1.36184 0.73680 0.84680 0.97572 1.02393 0.92507 0.90915 0.87994 0.89134 0.88017 0.88598 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.49 19.25 74.32 1.43 -5.06 16 2 C -0.23 -8.43 10.59 31.13 0.33 -8.10 16 3 C 0.17 6.68 2.34 43.11 0.10 6.78 16 4 H 0.09 3.53 7.80 -2.39 -0.02 3.51 16 5 N -0.67 -31.38 6.20 -505.03 -3.13 -34.51 16 6 C 0.21 11.76 5.23 85.56 0.45 12.20 16 7 C -0.54 -32.05 9.32 25.60 0.24 -31.81 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.00 0.11 5.46 84.65 0.46 0.58 16 10 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 11 Si 0.98 45.45 29.54 68.60 2.03 47.48 16 12 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 C 0.10 3.18 3.46 31.06 0.11 3.29 16 16 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 17 C -0.15 -3.32 6.36 31.86 0.20 -3.12 16 18 C -0.14 -2.53 7.16 32.05 0.23 -2.30 16 19 C 0.04 0.92 7.70 72.65 0.56 1.48 16 20 O -0.39 -12.91 10.44 -148.98 -1.56 -14.47 16 21 H 0.25 5.48 7.80 -4.42 -0.03 5.45 16 22 H 0.34 16.10 8.45 -89.69 -0.76 15.34 16 23 H 0.01 0.37 8.06 -2.39 -0.02 0.35 16 24 H -0.04 -2.55 7.98 -2.39 -0.02 -2.57 16 25 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 26 H 0.07 1.72 7.01 -2.38 -0.02 1.71 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -69.19 269.73 2.08 -67.12 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.35 Total: 17.82 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 4.11 Total: -26.07 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -2.85 Total: -91.88 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -1.56 Total: -14.47 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -69.19 2.08 -67.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839563569.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.050 kcal (2) G-P(sol) polarization free energy of solvation -69.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds