Wall clock time and date at job start Sun Mar 29 2020 21:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86804 * 119.99719 * 2 1 4 4 H 1.48492 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46999 * 300.00024 * 3 2 1 6 6 H 1.48497 * 109.47148 * 59.99805 * 3 2 1 7 7 C 1.39067 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00180 * 180.02562 * 7 2 1 9 9 N 1.36817 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00072 * 180.02562 * 9 7 2 11 11 O 1.21662 * 120.00301 * 359.97438 * 10 9 7 12 12 C 1.46951 * 119.99861 * 179.97438 * 10 9 7 13 13 C 1.33123 * 119.99973 * 179.97438 * 12 10 9 14 14 C 1.50704 * 119.99918 * 180.02562 * 13 12 10 15 15 C 1.54892 * 110.59841 * 123.31841 * 14 13 12 16 16 C 1.54888 * 102.74611 * 156.67350 * 15 14 13 17 17 C 1.54265 * 104.19721 * 322.05788 * 16 15 14 18 18 C 1.53873 * 106.59997 * 23.61451 * 17 16 15 19 19 H 0.96997 * 120.00465 * 0.02562 * 1 2 3 20 20 H 0.97004 * 119.99674 * 0.02562 * 9 7 2 21 21 H 1.08001 * 119.99881 * 0.02562 * 12 10 9 22 22 H 1.08001 * 120.00146 * 0.02562 * 13 12 10 23 23 H 1.09002 * 110.43639 * 0.70133 * 14 13 12 24 24 H 1.08992 * 110.75663 * 274.99212 * 15 14 13 25 25 H 1.09000 * 110.75339 * 38.36236 * 15 14 13 26 26 H 1.09007 * 110.48520 * 203.37936 * 16 15 14 27 27 H 1.08996 * 110.48377 * 80.74349 * 16 15 14 28 28 H 1.08993 * 110.03585 * 264.31946 * 17 16 15 29 29 H 1.09006 * 110.07186 * 142.91875 * 17 16 15 30 30 H 1.09002 * 110.03017 * 240.71676 * 18 17 16 31 31 H 1.08992 * 110.03600 * 119.28231 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.7073 1.3465 -0.0006 5 1 1.8886 2.3965 -1.2125 6 1 1.8886 2.3965 1.2124 7 6 2.0089 -1.2043 0.0005 8 1 3.0889 -1.2043 0.0010 9 7 1.3249 -2.3892 0.0016 10 6 1.9989 -3.5564 0.0026 11 8 3.2155 -3.5564 0.0022 12 6 1.2642 -4.8291 0.0043 13 6 1.9298 -5.9819 0.0049 14 6 1.1764 -7.2871 0.0060 15 6 1.5932 -8.1580 -1.2051 16 6 1.2369 -9.5901 -0.7349 17 6 1.6057 -9.5993 0.7630 18 6 1.5671 -8.1350 1.2341 19 1 -0.4851 0.8400 -0.0004 20 1 0.3548 -2.3893 0.0016 21 1 0.1841 -4.8291 0.0043 22 1 3.0098 -5.9819 0.0044 23 1 0.1015 -7.1060 -0.0062 24 1 1.0185 -7.8881 -2.0910 25 1 2.6627 -8.0687 -1.3952 26 1 1.8278 -10.3279 -1.2778 27 1 0.1719 -9.7811 -0.8669 28 1 2.6065 -10.0090 0.8987 29 1 0.8814 -10.1909 1.3230 30 1 2.5494 -7.8339 1.5984 31 1 0.8236 -8.0157 2.0221 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843782089.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:40 Heat of formation + Delta-G solvation = -49.477212 kcal Electronic energy + Delta-G solvation = -13040.782982 eV Core-core repulsion = 10707.228858 eV Total energy + Delta-G solvation = -2333.554124 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.50175 -37.77074 -34.07690 -32.60668 -31.21480 -28.64041 -28.00881 -25.07598 -21.89121 -20.43720 -19.59477 -18.69373 -17.78989 -16.17106 -15.66458 -14.83125 -14.50349 -14.04304 -13.36586 -13.28551 -13.23893 -12.73908 -11.65362 -11.56342 -11.43594 -11.19605 -11.13010 -11.04649 -10.85105 -10.58982 -10.38106 -10.35416 -10.24761 -9.58968 -8.62754 -8.39458 -7.99329 -6.47665 -3.82143 2.19193 3.18994 3.25226 3.33118 4.15797 4.39290 4.64804 4.72192 4.75547 5.09975 5.36507 5.43899 5.47536 5.58855 5.67239 5.68278 5.74825 5.80237 5.91295 5.97076 6.08195 6.24486 6.32930 6.34388 6.50988 7.08996 7.15454 7.50603 8.06465 8.60916 9.15261 9.53818 10.09438 10.69787 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.086376 B = 0.005224 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.087874 B = 5358.236775 C = 5450.039602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.022 3.978 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.297 4.297 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.458 3.542 11 O -0.606 6.606 12 C -0.175 4.175 13 C -0.110 4.110 14 C -0.063 4.063 15 C -0.117 4.117 16 C -0.125 4.125 17 C -0.124 4.124 18 C -0.118 4.118 19 H 0.273 0.727 20 H 0.394 0.606 21 H 0.109 0.891 22 H 0.120 0.880 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 -14.208 -0.026 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.427 4.427 8 H 0.124 0.876 9 N -0.182 5.182 10 C 0.247 3.753 11 O -0.494 6.494 12 C -0.196 4.196 13 C -0.131 4.131 14 C -0.082 4.082 15 C -0.154 4.154 16 C -0.163 4.163 17 C -0.162 4.162 18 C -0.155 4.155 19 H 0.083 0.917 20 H 0.227 0.773 21 H 0.127 0.873 22 H 0.138 0.862 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.824 -13.993 -0.018 14.017 hybrid contribution -0.339 0.940 0.030 1.000 sum -1.163 -13.053 0.011 13.105 Atomic orbital electron populations 1.69597 1.06093 1.28346 1.49468 1.25348 0.95645 0.99955 0.97093 0.85761 0.79777 0.80822 0.77794 1.19083 1.20623 1.20619 1.19841 0.93660 0.82388 1.46777 0.87642 1.41875 1.09344 1.04869 1.62160 1.18090 0.87724 0.84059 0.85396 1.90597 1.13685 1.87498 1.57572 1.22812 0.99311 0.93842 1.03636 1.23321 1.00194 0.92268 0.97285 1.21135 0.99269 0.92790 0.94998 1.22536 1.01684 0.93820 0.97368 1.22369 1.00968 0.97141 0.95791 1.22146 1.01217 0.96809 0.96037 1.22181 1.02081 0.93882 0.97406 0.91699 0.77276 0.87254 0.86171 0.90508 0.91485 0.91105 0.91892 0.91797 0.92002 0.92146 0.91344 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 13.05 55.50 0.72 -23.83 16 2 C 0.02 0.60 5.50 -17.45 -0.10 0.50 16 3 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.50 9.68 -15.02 -0.15 -8.64 16 8 H 0.11 3.16 7.15 -52.49 -0.38 2.78 16 9 N -0.55 -14.63 5.27 -12.10 -0.06 -14.69 16 10 C 0.46 11.67 7.71 -12.73 -0.10 11.58 16 11 O -0.61 -17.51 15.79 5.22 0.08 -17.43 16 12 C -0.17 -3.45 9.64 -37.84 -0.36 -3.81 16 13 C -0.11 -1.89 8.27 -36.09 -0.30 -2.19 16 14 C -0.06 -0.84 3.18 -90.11 -0.29 -1.12 16 15 C -0.12 -1.36 6.32 -24.74 -0.16 -1.51 16 16 C -0.13 -1.21 6.83 -25.07 -0.17 -1.38 16 17 C -0.12 -1.22 6.80 -25.61 -0.17 -1.39 16 18 C -0.12 -1.38 6.36 -25.61 -0.16 -1.55 16 19 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 20 H 0.39 9.97 7.88 -40.82 -0.32 9.65 16 21 H 0.11 1.87 7.90 -52.49 -0.41 1.46 16 22 H 0.12 2.27 7.49 -52.49 -0.39 1.87 16 23 H 0.08 0.97 7.87 -51.93 -0.41 0.56 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 26 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.85 7.83 -51.93 -0.41 0.44 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 266.61 15.07 4.02 4.02 Total: -1.00 -31.00 266.61 -6.63 -37.63 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -4.41 Total: 7.74 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -1.95 Total: -9.52 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.66 Total: -38.53 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.08 Total: -17.43 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.00 -6.63 -37.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843782089.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.851 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds