Wall clock time and date at job start Sun Mar 29 2020 21:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86804 * 119.99719 * 2 1 4 4 H 1.48492 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46999 * 300.00024 * 3 2 1 6 6 H 1.48497 * 109.47148 * 59.99805 * 3 2 1 7 7 C 1.39067 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00180 * 180.02562 * 7 2 1 9 9 N 1.36817 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00072 * 180.02562 * 9 7 2 11 11 O 1.21662 * 120.00301 * 359.97438 * 10 9 7 12 12 C 1.46951 * 119.99861 * 179.97438 * 10 9 7 13 13 C 1.33123 * 119.99973 * 179.97438 * 12 10 9 14 14 C 1.50704 * 119.99918 * 180.02562 * 13 12 10 15 15 C 1.54892 * 110.59841 * 123.31841 * 14 13 12 16 16 C 1.54888 * 102.74611 * 156.67350 * 15 14 13 17 17 C 1.54265 * 104.19721 * 322.05788 * 16 15 14 18 18 C 1.53873 * 106.59997 * 23.61451 * 17 16 15 19 19 H 0.96997 * 120.00465 * 0.02562 * 1 2 3 20 20 H 0.97004 * 119.99674 * 0.02562 * 9 7 2 21 21 H 1.08001 * 119.99881 * 0.02562 * 12 10 9 22 22 H 1.08001 * 120.00146 * 0.02562 * 13 12 10 23 23 H 1.09002 * 110.43639 * 0.70133 * 14 13 12 24 24 H 1.08992 * 110.75663 * 274.99212 * 15 14 13 25 25 H 1.09000 * 110.75339 * 38.36236 * 15 14 13 26 26 H 1.09007 * 110.48520 * 203.37936 * 16 15 14 27 27 H 1.08996 * 110.48377 * 80.74349 * 16 15 14 28 28 H 1.08993 * 110.03585 * 264.31946 * 17 16 15 29 29 H 1.09006 * 110.07186 * 142.91875 * 17 16 15 30 30 H 1.09002 * 110.03017 * 240.71676 * 18 17 16 31 31 H 1.08992 * 110.03600 * 119.28231 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 3.7073 1.3465 -0.0006 5 1 1.8886 2.3965 -1.2125 6 1 1.8886 2.3965 1.2124 7 6 2.0089 -1.2043 0.0005 8 1 3.0889 -1.2043 0.0010 9 7 1.3249 -2.3892 0.0016 10 6 1.9989 -3.5564 0.0026 11 8 3.2155 -3.5564 0.0022 12 6 1.2642 -4.8291 0.0043 13 6 1.9298 -5.9819 0.0049 14 6 1.1764 -7.2871 0.0060 15 6 1.5932 -8.1580 -1.2051 16 6 1.2369 -9.5901 -0.7349 17 6 1.6057 -9.5993 0.7630 18 6 1.5671 -8.1350 1.2341 19 1 -0.4851 0.8400 -0.0004 20 1 0.3548 -2.3893 0.0016 21 1 0.1841 -4.8291 0.0043 22 1 3.0098 -5.9819 0.0044 23 1 0.1015 -7.1060 -0.0062 24 1 1.0185 -7.8881 -2.0910 25 1 2.6627 -8.0687 -1.3952 26 1 1.8278 -10.3279 -1.2778 27 1 0.1719 -9.7811 -0.8669 28 1 2.6065 -10.0090 0.8987 29 1 0.8814 -10.1909 1.3230 30 1 2.5494 -7.8339 1.5984 31 1 0.8236 -8.0157 2.0221 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843782089.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:40 Heat of formation + Delta-G solvation = -69.003800 kcal Electronic energy + Delta-G solvation = -13041.629718 eV Core-core repulsion = 10707.228858 eV Total energy + Delta-G solvation = -2334.400860 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.22090 -39.06890 -36.13191 -34.08050 -33.30046 -29.51815 -29.26961 -27.02198 -23.46879 -21.29277 -20.85462 -20.47745 -19.73275 -17.94640 -16.85051 -16.49324 -15.87806 -15.73384 -15.36600 -14.75640 -14.29329 -14.22475 -13.58253 -12.99249 -12.81839 -12.56781 -12.48126 -12.17740 -12.11277 -11.95917 -11.89532 -11.60599 -11.51894 -11.23284 -10.46848 -10.20091 -10.03877 -8.54875 -6.00508 0.59206 1.39898 1.41021 1.55207 2.27321 2.46504 3.21644 3.26501 3.74908 3.84005 3.89120 4.21991 4.35380 4.60243 4.63985 4.64540 4.70409 4.73967 4.89192 5.01325 5.15360 5.25327 5.33916 5.35433 5.39964 5.53883 5.59566 5.65626 5.99792 6.53330 7.04478 7.47998 8.05225 8.62804 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.086376 B = 0.005224 C = 0.005136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.087874 B = 5358.236775 C = 5450.039602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.011 4.011 3 Si 0.999 3.001 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.340 4.340 8 H 0.080 0.920 9 N -0.558 5.558 10 C 0.453 3.547 11 O -0.650 6.650 12 C -0.203 4.203 13 C -0.070 4.070 14 C -0.065 4.065 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.121 4.121 18 C -0.119 4.119 19 H 0.282 0.718 20 H 0.398 0.602 21 H 0.140 0.860 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 -15.392 -0.048 15.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.211 4.211 3 Si 0.822 3.178 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.098 0.902 9 N -0.191 5.191 10 C 0.244 3.756 11 O -0.541 6.541 12 C -0.223 4.223 13 C -0.091 4.091 14 C -0.083 4.083 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.157 4.157 19 H 0.091 0.909 20 H 0.232 0.768 21 H 0.157 0.843 22 H 0.118 0.882 23 H 0.109 0.891 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.800 -15.192 -0.040 15.299 hybrid contribution -0.011 1.172 0.038 1.173 sum -1.811 -14.020 -0.002 14.136 Atomic orbital electron populations 1.69648 1.07042 1.29727 1.48967 1.26179 0.96595 1.02692 0.95663 0.84793 0.77957 0.76459 0.78634 1.19756 1.19181 1.19180 1.19790 0.92934 0.84118 1.50134 0.90211 1.41896 1.09440 1.04908 1.62894 1.19032 0.87538 0.85562 0.83453 1.90551 1.15836 1.88417 1.59286 1.22636 1.00481 0.91491 1.07721 1.23640 0.99530 0.93739 0.92217 1.21263 0.99466 0.90732 0.96869 1.22566 1.01309 0.94991 0.96757 1.22359 1.01989 0.95731 0.95558 1.22145 1.02136 0.95309 0.96294 1.22203 1.01624 0.95041 0.96824 0.90876 0.76779 0.84269 0.88200 0.89067 0.91004 0.91923 0.90574 0.90596 0.91533 0.90519 0.92570 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.06 13.05 21.68 0.28 -49.78 16 2 C -0.01 -0.58 5.50 84.96 0.47 -0.11 16 3 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.34 -20.14 9.68 84.11 0.81 -19.33 16 8 H 0.08 5.03 7.15 -2.91 -0.02 5.01 16 9 N -0.56 -30.67 5.27 -310.43 -1.64 -32.31 16 10 C 0.45 23.83 7.71 86.53 0.67 24.49 16 11 O -0.65 -39.21 15.79 -4.23 -0.07 -39.28 16 12 C -0.20 -7.96 9.64 23.40 0.23 -7.74 16 13 C -0.07 -2.38 8.27 24.54 0.20 -2.18 16 14 C -0.06 -1.57 3.18 -10.46 -0.03 -1.60 16 15 C -0.12 -2.48 6.32 31.89 0.20 -2.28 16 16 C -0.12 -1.89 6.83 31.67 0.22 -1.67 16 17 C -0.12 -1.98 6.80 31.32 0.21 -1.77 16 18 C -0.12 -2.52 6.36 31.32 0.20 -2.33 16 19 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 20 H 0.40 20.64 7.88 -92.71 -0.73 19.91 16 21 H 0.14 4.59 7.90 -2.91 -0.02 4.57 16 22 H 0.10 3.83 7.49 -2.91 -0.02 3.80 16 23 H 0.09 2.02 7.87 -2.39 -0.02 2.00 16 24 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.41 8.05 -2.39 -0.02 1.39 16 26 H 0.08 1.04 8.14 -2.38 -0.02 1.03 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.06 1.32 7.83 -2.39 -0.02 1.30 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.13 266.61 4.16 -63.97 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.38 Total: 26.53 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 3.17 Total: -14.50 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.35 Total: -82.08 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.07 Total: -39.28 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -68.13 4.16 -63.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843782089.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.036 kcal (2) G-P(sol) polarization free energy of solvation -68.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds