Wall clock time and date at job start Sun Mar 29 2020 21:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31346 * 1 3 3 Si 1.86804 * 120.00056 * 2 1 4 4 H 1.48498 * 109.47227 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47216 * 300.00739 * 3 2 1 6 6 H 1.48502 * 109.46862 * 60.00090 * 3 2 1 7 7 C 1.39077 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99493 * 179.97438 * 7 2 1 9 9 N 1.36815 * 120.00351 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00244 * 180.02562 * 9 7 2 11 11 O 1.21661 * 120.00129 * 359.97438 * 10 9 7 12 12 C 1.46946 * 119.99972 * 180.27888 * 10 9 7 13 13 C 1.33128 * 120.00267 * 186.24531 * 12 10 9 14 14 C 1.50700 * 119.99595 * 17.82388 * 13 12 10 15 15 C 1.54267 * 110.03129 * 250.99715 * 14 13 12 16 16 C 1.54892 * 104.19840 * 217.10390 * 15 14 13 17 17 C 1.54893 * 102.74556 * 37.94319 * 16 15 14 18 18 C 1.53871 * 110.03827 * 133.83243 * 14 13 12 19 19 H 0.96998 * 120.00448 * 359.97438 * 1 2 3 20 20 H 0.97004 * 119.99693 * 0.02562 * 9 7 2 21 21 H 1.08001 * 120.00092 * 6.24269 * 12 10 9 22 22 H 1.08000 * 120.00363 * 197.82037 * 13 12 10 23 23 H 1.08997 * 110.01847 * 12.43464 * 14 13 12 24 24 H 1.08998 * 110.48635 * 335.78295 * 15 14 13 25 25 H 1.09007 * 110.48890 * 98.42296 * 15 14 13 26 26 H 1.08994 * 110.75188 * 279.62477 * 16 15 14 27 27 H 1.09002 * 110.75271 * 156.25634 * 16 15 14 28 28 H 1.09000 * 110.47942 * 203.38171 * 17 16 15 29 29 H 1.08998 * 110.59689 * 80.79083 * 17 16 15 30 30 H 1.09002 * 110.03702 * 238.57125 * 18 14 13 31 31 H 1.09002 * 110.02939 * 359.94354 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.7075 1.3464 -0.0006 5 1 1.8886 2.3965 -1.2124 6 1 1.8887 2.3964 1.2125 7 6 2.0088 -1.2044 -0.0005 8 1 3.0889 -1.2044 -0.0010 9 7 1.3248 -2.3893 -0.0005 10 6 1.9987 -3.5565 -0.0005 11 8 3.2153 -3.5565 -0.0010 12 6 1.2640 -4.8291 -0.0067 13 6 1.9231 -5.9789 0.1187 14 6 3.3294 -5.9860 0.6603 15 6 4.3286 -6.3153 -0.4680 16 6 5.4040 -7.1917 0.2208 17 6 4.5672 -8.0558 1.1965 18 6 3.4812 -7.0926 1.7186 19 1 -0.4851 0.8400 0.0004 20 1 0.3548 -2.3893 -0.0005 21 1 0.1892 -4.8316 -0.1130 22 1 1.4500 -6.9066 -0.1677 23 1 3.5657 -5.0160 1.0977 24 1 3.8349 -6.8727 -1.2641 25 1 4.7751 -5.4019 -0.8609 26 1 6.1157 -6.5722 0.7664 27 1 5.9163 -7.8191 -0.5088 28 1 5.1879 -8.4125 2.0185 29 1 4.1119 -8.8954 0.6712 30 1 3.7919 -6.6598 2.6696 31 1 2.5374 -7.6239 1.8412 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843782090.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:41 Heat of formation + Delta-G solvation = -55.378468 kcal Electronic energy + Delta-G solvation = -13495.828021 eV Core-core repulsion = 11162.018000 eV Total energy + Delta-G solvation = -2333.810021 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.43823 -38.76894 -36.05759 -33.83961 -33.26366 -29.47096 -29.06088 -27.00340 -23.40983 -21.42783 -21.06771 -20.42390 -19.43861 -17.66642 -16.62753 -16.58619 -15.88248 -15.67523 -15.18765 -14.44959 -14.27019 -14.12581 -13.55250 -13.40536 -12.97307 -12.51178 -12.43211 -12.12542 -11.90204 -11.83694 -11.72570 -11.59355 -11.39039 -11.29949 -10.19470 -9.91829 -9.80437 -8.50832 -5.95031 0.63073 1.39720 1.40535 1.54616 2.28701 2.50775 3.30922 3.37303 3.85543 3.88884 3.94429 4.34809 4.40074 4.62486 4.73020 4.75320 4.86545 4.88826 4.92874 5.09675 5.15893 5.23311 5.36887 5.45514 5.51546 5.56399 5.60576 5.84593 6.11680 6.59684 7.10804 7.56231 8.13932 8.67180 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058649 B = 0.006729 C = 0.006294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.303843 B = 4160.328685 C = 4447.275498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.015 4.015 3 Si 0.996 3.004 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.333 4.333 8 H 0.080 0.920 9 N -0.567 5.567 10 C 0.457 3.543 11 O -0.621 6.621 12 C -0.221 4.221 13 C -0.063 4.063 14 C -0.089 4.089 15 C -0.104 4.104 16 C -0.123 4.123 17 C -0.114 4.114 18 C -0.115 4.115 19 H 0.279 0.721 20 H 0.395 0.605 21 H 0.139 0.861 22 H 0.155 0.845 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.034 0.966 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 -13.085 1.248 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.215 4.215 3 Si 0.819 3.181 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.201 5.201 10 C 0.248 3.752 11 O -0.511 6.511 12 C -0.242 4.242 13 C -0.083 4.083 14 C -0.107 4.107 15 C -0.141 4.141 16 C -0.160 4.160 17 C -0.152 4.152 18 C -0.153 4.153 19 H 0.089 0.911 20 H 0.229 0.771 21 H 0.157 0.843 22 H 0.173 0.827 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.709 -12.884 1.250 13.465 hybrid contribution -0.374 1.293 -0.079 1.349 sum 3.334 -11.590 1.171 12.117 Atomic orbital electron populations 1.69656 1.07020 1.29434 1.49810 1.26133 0.96549 1.02620 0.96166 0.84831 0.77986 0.76812 0.78453 1.19752 1.19427 1.19422 1.19751 0.92846 0.84147 1.49488 0.90154 1.41952 1.09298 1.05000 1.63885 1.19022 0.87769 0.85194 0.83178 1.90513 1.15086 1.87797 1.57664 1.22742 1.00441 0.92186 1.08832 1.23894 0.95663 0.97330 0.91443 1.21282 0.92697 1.00310 0.96458 1.22177 0.96166 0.98482 0.97322 1.22511 0.97096 0.97774 0.98655 1.22343 0.96529 0.97478 0.98818 1.22230 1.00125 0.95787 0.97160 0.91137 0.77145 0.84342 0.82727 0.91275 0.91303 0.94669 0.92739 0.90138 0.90663 0.90052 0.92772 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.76 13.05 21.69 0.28 -50.48 16 2 C -0.01 -0.80 5.50 84.97 0.47 -0.34 16 3 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.33 -19.48 9.68 84.12 0.81 -18.67 16 8 H 0.08 4.99 7.15 -2.91 -0.02 4.97 16 9 N -0.57 -30.67 5.27 -310.43 -1.64 -32.31 16 10 C 0.46 23.07 7.47 86.53 0.65 23.71 16 11 O -0.62 -34.80 12.42 -4.22 -0.05 -34.85 16 12 C -0.22 -8.38 9.99 23.40 0.23 -8.15 16 13 C -0.06 -1.99 8.44 24.54 0.21 -1.78 16 14 C -0.09 -3.02 2.33 -10.82 -0.03 -3.04 16 15 C -0.10 -3.30 6.16 31.67 0.20 -3.10 16 16 C -0.12 -3.03 6.91 31.89 0.22 -2.81 16 17 C -0.11 -2.36 6.83 31.67 0.22 -2.14 16 18 C -0.12 -2.94 6.45 31.32 0.20 -2.74 16 19 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 20 H 0.39 20.46 7.88 -92.71 -0.73 19.73 16 21 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 22 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 23 H 0.07 3.07 5.36 -2.39 -0.01 3.06 16 24 H 0.07 1.95 7.85 -2.39 -0.02 1.93 16 25 H 0.03 1.36 7.67 -2.38 -0.02 1.35 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.70 7.67 -2.39 -0.02 1.68 16 Total: -1.00 -66.35 260.09 4.19 -62.17 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.39 Total: 28.84 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 3.18 Total: -19.06 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -1.35 Total: -82.79 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.05 Total: -34.85 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -66.35 4.19 -62.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843782090.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.791 kcal (2) G-P(sol) polarization free energy of solvation -66.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds