Wall clock time and date at job start Sun Mar 29 2020 21:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42890 * 109.47071 * 252.45106 * 3 2 1 5 5 C 1.42908 * 114.00130 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47312 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47159 * 65.00192 * 6 5 4 8 8 C 1.36942 * 120.00151 * 270.00234 * 7 6 5 9 9 H 1.08001 * 120.00152 * 141.34132 * 8 7 6 10 10 C 1.38812 * 119.99730 * 321.33957 * 8 7 6 11 11 N 1.31615 * 119.99852 * 157.87885 * 10 8 7 12 12 Si 1.86797 * 120.00017 * 337.87431 * 10 8 7 13 13 H 1.48494 * 109.47472 * 95.67706 * 12 10 8 14 14 H 1.48510 * 109.47018 * 215.67874 * 12 10 8 15 15 H 1.48501 * 109.46998 * 335.67184 * 12 10 8 16 16 C 1.46500 * 119.99967 * 89.99842 * 7 6 5 17 17 C 1.53001 * 117.49945 * 183.19512 * 16 7 6 18 18 C 1.52996 * 117.50188 * 114.53358 * 16 7 6 19 19 H 4.38442 * 5.44536 * 179.97438 * 4 1 2 20 20 H 1.08996 * 109.46793 * 132.45263 * 3 2 1 21 21 H 1.08997 * 109.46715 * 12.45189 * 3 2 1 22 22 H 1.08995 * 109.46594 * 60.00170 * 5 4 3 23 23 H 1.08998 * 109.46769 * 300.00215 * 5 4 3 24 24 H 1.09001 * 109.47470 * 305.00491 * 6 5 4 25 25 H 1.08995 * 109.47306 * 185.00274 * 6 5 4 26 26 H 0.96999 * 119.99883 * 180.02562 * 11 10 8 27 27 H 1.09001 * 115.54827 * 328.86011 * 16 7 6 28 28 H 1.08996 * 117.50155 * 359.97438 * 17 16 7 29 29 H 1.09005 * 117.50266 * 145.02194 * 17 16 7 30 30 H 1.08998 * 117.50344 * 214.98119 * 18 16 7 31 31 H 1.09008 * 117.49583 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1221 0.4071 1.2845 5 6 4.5467 0.4412 1.3923 6 6 4.9410 0.8865 2.8019 7 7 4.5030 -0.1197 3.7724 8 6 3.2597 -0.0288 4.3391 9 1 2.6786 -0.9224 4.5127 10 6 2.7462 1.2121 4.6906 11 7 1.4463 1.3745 4.8174 12 14 3.9003 2.6514 4.9837 13 1 4.0094 3.4592 3.7425 14 1 3.3664 3.4986 6.0804 15 1 5.2425 2.1406 5.3616 16 6 5.3950 -1.2233 4.1365 17 6 4.8523 -2.2826 5.0979 18 6 5.9005 -1.2764 5.5795 19 1 -1.0501 0.0002 -0.0001 20 1 3.0090 0.6945 -0.7582 21 1 3.0097 -1.0027 -0.2216 22 1 4.9495 1.1439 0.6629 23 1 4.9495 -0.5532 1.1998 24 1 4.4651 1.8407 3.0280 25 1 6.0238 0.9983 2.8581 26 1 1.0875 2.2417 5.0627 27 1 6.0750 -1.5564 3.3524 28 1 3.8317 -2.1582 5.4599 29 1 5.1755 -3.3125 4.9467 30 1 6.9130 -1.6448 5.7450 31 1 5.5698 -0.4899 6.2580 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851744440.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:49 Heat of formation + Delta-G solvation = 71.317795 kcal Electronic energy + Delta-G solvation = -13921.016766 eV Core-core repulsion = 11592.700707 eV Total energy + Delta-G solvation = -2328.316059 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.76686 -36.72862 -33.63768 -32.58237 -31.26513 -28.29039 -26.12256 -24.00748 -22.16192 -21.32762 -19.52394 -17.97532 -16.52509 -16.08502 -15.64462 -15.07500 -14.85811 -14.31860 -13.62787 -12.89437 -12.59768 -12.21848 -12.06791 -11.69032 -11.15776 -10.77415 -10.72872 -10.39453 -10.06210 -10.05107 -9.89790 -9.64826 -9.38567 -9.35412 -8.87563 -8.35901 -6.62994 -5.85195 -3.26970 3.02751 3.25286 3.37451 3.52057 3.57141 4.55974 4.62384 4.81554 4.92335 5.05177 5.45732 5.56259 5.75813 5.80723 5.87053 5.93254 5.99710 6.09710 6.20681 6.27403 6.34187 6.46256 6.53634 6.72737 6.97066 7.16829 7.89176 8.04462 8.18484 8.53564 9.08342 9.83856 10.20217 11.30256 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.012915 C = 0.010708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.645355 B = 2167.496220 C = 2614.251096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.177 4.177 3 C 0.167 3.833 4 O -0.337 6.337 5 C 0.047 3.953 6 C 0.137 3.863 7 N -0.567 5.567 8 C -0.252 4.252 9 H 0.079 0.921 10 C 0.045 3.955 11 N -0.894 5.894 12 Si 0.869 3.131 13 H -0.286 1.286 14 H -0.303 1.303 15 H -0.268 1.268 16 C 0.119 3.881 17 C -0.187 4.187 18 C -0.225 4.225 19 H 0.217 0.783 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.033 0.967 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.260 0.740 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.934 -2.771 -7.578 10.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.090 3.910 4 O -0.256 6.256 5 C -0.032 4.032 6 C 0.011 3.989 7 N -0.286 5.286 8 C -0.381 4.381 9 H 0.096 0.904 10 C -0.155 4.155 11 N -0.535 5.535 12 Si 0.699 3.301 13 H -0.214 1.214 14 H -0.231 1.231 15 H -0.193 1.193 16 C 0.010 3.990 17 C -0.226 4.226 18 C -0.266 4.266 19 H 0.234 0.766 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.652 -2.594 -7.386 9.655 hybrid contribution 0.492 0.831 0.027 0.966 sum 6.144 -1.762 -7.359 9.748 Atomic orbital electron populations 1.24788 0.95769 1.01266 0.98950 1.22603 0.94036 1.00041 1.01009 1.19022 0.84900 0.98916 0.88137 1.88405 1.20645 1.88227 1.28275 1.23316 0.81533 0.98806 0.99532 1.21310 0.96761 0.93894 0.86927 1.43601 1.14218 1.26429 1.44343 1.18544 0.89550 0.94196 1.35777 0.90392 1.25372 0.95113 0.97441 0.97621 1.69871 1.10760 1.23713 1.49130 0.87047 0.82714 0.83441 0.76906 1.21428 1.23072 1.19300 1.21156 0.95525 0.92776 0.89498 1.23053 1.00076 0.93376 1.06051 1.23394 0.96803 1.03187 1.03200 0.76590 0.92255 0.91933 0.94884 0.94055 0.91826 0.92309 0.92993 0.89320 0.87855 0.90598 0.90926 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 19.25 29.55 0.57 -2.71 16 2 C -0.18 -3.37 13.73 -37.12 -0.51 -3.88 16 3 C 0.17 2.95 6.41 34.37 0.22 3.17 16 4 O -0.34 -7.57 9.78 -35.23 -0.34 -7.92 16 5 C 0.05 0.90 6.28 37.16 0.23 1.13 16 6 C 0.14 2.96 4.98 -4.04 -0.02 2.94 16 7 N -0.57 -13.59 2.37 -165.67 -0.39 -13.98 16 8 C -0.25 -7.13 8.46 -15.06 -0.13 -7.26 16 9 H 0.08 2.42 6.86 -52.49 -0.36 2.06 16 10 C 0.05 1.33 5.30 -17.43 -0.09 1.24 16 11 N -0.89 -28.05 13.97 55.49 0.78 -27.28 16 12 Si 0.87 22.62 25.07 -169.99 -4.26 18.35 16 13 H -0.29 -7.29 6.69 56.52 0.38 -6.91 16 14 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 15 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 16 C 0.12 2.43 6.56 -67.93 -0.45 1.98 16 17 C -0.19 -3.67 9.80 -26.69 -0.26 -3.93 16 18 C -0.22 -4.36 10.36 -26.70 -0.28 -4.63 16 19 H 0.22 2.80 7.80 -54.09 -0.42 2.38 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 1.54 3.41 -51.93 -0.18 1.37 16 25 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 26 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.10 2.31 6.45 -51.93 -0.33 1.97 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.09 1.94 8.14 -51.92 -0.42 1.51 16 LS Contribution 269.25 15.07 4.06 4.06 Total: -1.00 -32.96 269.25 -5.13 -38.09 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.25 Total: 0.63 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.71 Total: -11.96 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.38 Total: -41.26 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.34 Total: -7.92 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.26 Total: 18.35 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.96 -5.13 -38.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851744440.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.411 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds