Wall clock time and date at job start Sun Mar 29 2020 21:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42890 * 109.47071 * 252.45106 * 3 2 1 5 5 C 1.42908 * 114.00130 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47312 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.47159 * 65.00192 * 6 5 4 8 8 C 1.36942 * 120.00151 * 270.00234 * 7 6 5 9 9 H 1.08001 * 120.00152 * 141.34132 * 8 7 6 10 10 C 1.38812 * 119.99730 * 321.33957 * 8 7 6 11 11 N 1.31615 * 119.99852 * 157.87885 * 10 8 7 12 12 Si 1.86797 * 120.00017 * 337.87431 * 10 8 7 13 13 H 1.48494 * 109.47472 * 95.67706 * 12 10 8 14 14 H 1.48510 * 109.47018 * 215.67874 * 12 10 8 15 15 H 1.48501 * 109.46998 * 335.67184 * 12 10 8 16 16 C 1.46500 * 119.99967 * 89.99842 * 7 6 5 17 17 C 1.53001 * 117.49945 * 183.19512 * 16 7 6 18 18 C 1.52996 * 117.50188 * 114.53358 * 16 7 6 19 19 H 4.38442 * 5.44536 * 179.97438 * 4 1 2 20 20 H 1.08996 * 109.46793 * 132.45263 * 3 2 1 21 21 H 1.08997 * 109.46715 * 12.45189 * 3 2 1 22 22 H 1.08995 * 109.46594 * 60.00170 * 5 4 3 23 23 H 1.08998 * 109.46769 * 300.00215 * 5 4 3 24 24 H 1.09001 * 109.47470 * 305.00491 * 6 5 4 25 25 H 1.08995 * 109.47306 * 185.00274 * 6 5 4 26 26 H 0.96999 * 119.99883 * 180.02562 * 11 10 8 27 27 H 1.09001 * 115.54827 * 328.86011 * 16 7 6 28 28 H 1.08996 * 117.50155 * 359.97438 * 17 16 7 29 29 H 1.09005 * 117.50266 * 145.02194 * 17 16 7 30 30 H 1.08998 * 117.50344 * 214.98119 * 18 16 7 31 31 H 1.09008 * 117.49583 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1221 0.4071 1.2845 5 6 4.5467 0.4412 1.3923 6 6 4.9410 0.8865 2.8019 7 7 4.5030 -0.1197 3.7724 8 6 3.2597 -0.0288 4.3391 9 1 2.6786 -0.9224 4.5127 10 6 2.7462 1.2121 4.6906 11 7 1.4463 1.3745 4.8174 12 14 3.9003 2.6514 4.9837 13 1 4.0094 3.4592 3.7425 14 1 3.3664 3.4986 6.0804 15 1 5.2425 2.1406 5.3616 16 6 5.3950 -1.2233 4.1365 17 6 4.8523 -2.2826 5.0979 18 6 5.9005 -1.2764 5.5795 19 1 -1.0501 0.0002 -0.0001 20 1 3.0090 0.6945 -0.7582 21 1 3.0097 -1.0027 -0.2216 22 1 4.9495 1.1439 0.6629 23 1 4.9495 -0.5532 1.1998 24 1 4.4651 1.8407 3.0280 25 1 6.0238 0.9983 2.8581 26 1 1.0875 2.2417 5.0627 27 1 6.0750 -1.5564 3.3524 28 1 3.8317 -2.1582 5.4599 29 1 5.1755 -3.3125 4.9467 30 1 6.9130 -1.6448 5.7450 31 1 5.5698 -0.4899 6.2580 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851744440.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:49 Heat of formation + Delta-G solvation = 49.013104 kcal Electronic energy + Delta-G solvation = -13921.983970 eV Core-core repulsion = 11592.700707 eV Total energy + Delta-G solvation = -2329.283263 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.36835 -38.32040 -35.34154 -34.14237 -33.23038 -29.97505 -27.59349 -25.97103 -23.74224 -22.89004 -21.33490 -19.32599 -18.43789 -17.68556 -17.32414 -16.80784 -16.42932 -15.79582 -15.41491 -14.57364 -14.42879 -13.95746 -13.79259 -13.30219 -12.81927 -12.62358 -12.44858 -12.12053 -11.80544 -11.66492 -11.47295 -11.35543 -11.16855 -10.92040 -10.54179 -10.27965 -8.54920 -8.09193 -5.46232 1.30140 1.40031 1.50961 1.62685 1.86630 2.47669 3.05677 3.19354 3.30357 3.42854 3.72875 4.28172 4.30547 4.36352 4.44803 4.45590 4.53022 4.60314 4.65619 4.74337 4.96513 5.05432 5.06560 5.09932 5.35047 5.56922 6.03522 6.28030 6.53160 6.67994 7.09241 7.73595 8.11603 9.10979 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.012915 C = 0.010708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.645355 B = 2167.496220 C = 2614.251096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.229 4.229 3 C 0.163 3.837 4 O -0.391 6.391 5 C 0.048 3.952 6 C 0.126 3.874 7 N -0.583 5.583 8 C -0.225 4.225 9 H 0.033 0.967 10 C -0.016 4.016 11 N -0.949 5.949 12 Si 0.935 3.065 13 H -0.278 1.278 14 H -0.315 1.315 15 H -0.253 1.253 16 C 0.106 3.894 17 C -0.191 4.191 18 C -0.212 4.212 19 H 0.250 0.750 20 H 0.089 0.911 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.034 0.966 25 H 0.097 0.903 26 H 0.256 0.744 27 H 0.131 0.869 28 H 0.062 0.938 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.609 -3.151 -8.887 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.229 4.229 3 C 0.088 3.912 4 O -0.310 6.310 5 C -0.030 4.030 6 C 0.001 3.999 7 N -0.302 5.302 8 C -0.355 4.355 9 H 0.051 0.949 10 C -0.212 4.212 11 N -0.594 5.594 12 Si 0.765 3.235 13 H -0.205 1.205 14 H -0.244 1.244 15 H -0.177 1.177 16 C -0.001 4.001 17 C -0.229 4.229 18 C -0.252 4.252 19 H 0.267 0.733 20 H 0.107 0.893 21 H 0.100 0.900 22 H 0.087 0.913 23 H 0.079 0.921 24 H 0.052 0.948 25 H 0.115 0.885 26 H 0.065 0.935 27 H 0.148 0.852 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.386 -2.991 -8.718 12.461 hybrid contribution -0.364 0.812 0.387 0.971 sum 8.022 -2.179 -8.332 11.769 Atomic orbital electron populations 1.25773 0.96929 0.99964 0.97339 1.23435 0.95525 1.01437 1.02533 1.19289 0.84275 1.00675 0.87008 1.88313 1.22702 1.88895 1.31134 1.23305 0.80339 1.00814 0.98547 1.21497 0.98680 0.91837 0.87866 1.43704 1.13409 1.27895 1.45231 1.18281 0.90886 0.92389 1.33949 0.94935 1.25960 0.96196 1.00370 0.98665 1.70019 1.12802 1.24197 1.52400 0.85966 0.80977 0.80150 0.76424 1.20496 1.24431 1.17735 1.21549 0.95789 0.91684 0.91107 1.23024 0.98330 0.95491 1.06071 1.23369 0.98495 1.01952 1.01406 0.73346 0.89297 0.90045 0.91266 0.92095 0.94774 0.88482 0.93500 0.85200 0.91916 0.86976 0.86843 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.22 19.25 74.32 1.43 -4.78 16 2 C -0.23 -8.69 13.73 31.13 0.43 -8.26 16 3 C 0.16 5.54 6.41 70.18 0.45 5.99 16 4 O -0.39 -17.20 9.78 -148.98 -1.46 -18.66 16 5 C 0.05 1.68 6.28 71.98 0.45 2.13 16 6 C 0.13 5.10 4.98 86.38 0.43 5.52 16 7 N -0.58 -27.11 2.37 -678.04 -1.61 -28.72 16 8 C -0.22 -13.02 8.46 84.03 0.71 -12.31 16 9 H 0.03 2.15 6.86 -2.91 -0.02 2.13 16 10 C -0.02 -0.99 5.30 84.86 0.45 -0.54 16 11 N -0.95 -62.26 13.97 21.65 0.30 -61.96 16 12 Si 0.94 47.80 25.07 68.60 1.72 49.52 16 13 H -0.28 -13.61 6.69 99.48 0.67 -12.95 16 14 H -0.32 -16.51 7.11 99.48 0.71 -15.81 16 15 H -0.25 -12.12 7.11 99.48 0.71 -11.41 16 16 C 0.11 4.00 6.56 44.99 0.30 4.30 16 17 C -0.19 -7.18 9.80 30.62 0.30 -6.88 16 18 C -0.21 -7.60 10.36 30.62 0.32 -7.28 16 19 H 0.25 6.09 7.80 -4.41 -0.03 6.05 16 20 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 21 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 22 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.03 1.59 3.41 -2.39 -0.01 1.59 16 25 H 0.10 3.14 8.07 -2.39 -0.02 3.12 16 26 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 27 H 0.13 3.87 8.14 -2.39 -0.02 3.85 16 28 H 0.06 2.88 6.45 -2.39 -0.02 2.87 16 29 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 30 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -75.09 269.25 5.28 -69.81 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.06 Total: 12.12 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 5.26 Total: -22.11 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -1.31 Total: -90.68 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -1.46 Total: -18.66 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.72 Total: 49.52 kcal Total: -75.09 5.28 -69.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851744440.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.824 kcal (2) G-P(sol) polarization free energy of solvation -75.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds