Wall clock time and date at job start Sun Mar 29 2020 21:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48503 * 109.47305 * 269.99999 * 3 2 1 5 5 H 1.48496 * 109.47524 * 29.99800 * 3 2 1 6 6 H 1.48498 * 109.47214 * 150.00399 * 3 2 1 7 7 C 1.37870 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99708 * 160.89543 * 7 2 1 9 9 C 1.50695 * 120.00225 * 340.88774 * 7 2 1 10 10 C 1.53002 * 115.56184 * 320.07904 * 9 7 2 11 11 O 1.42895 * 109.46936 * 269.88380 * 10 9 7 12 12 N 1.41603 * 113.99594 * 182.67488 * 11 10 9 13 13 C 1.27954 * 120.00020 * 175.64326 * 12 11 10 14 14 C 1.51404 * 136.31495 * 4.98697 * 13 12 11 15 15 C 1.53375 * 87.52081 * 206.05391 * 14 13 12 16 16 C 1.51409 * 136.32112 * 185.34999 * 13 12 11 17 17 C 1.53004 * 117.49829 * 105.76750 * 9 7 2 18 18 C 1.53001 * 60.00132 * 107.49231 * 17 9 7 19 19 H 0.96998 * 119.99713 * 5.35490 * 1 2 3 20 20 H 1.08990 * 109.47064 * 29.89291 * 10 9 7 21 21 H 1.09001 * 109.46856 * 149.89030 * 10 9 7 22 22 H 1.09000 * 113.56427 * 320.63596 * 14 13 12 23 23 H 1.09003 * 113.56327 * 91.37047 * 14 13 12 24 24 H 1.09005 * 113.97025 * 220.29376 * 15 14 13 25 25 H 1.09001 * 113.60271 * 88.79382 * 15 14 13 26 26 H 1.08993 * 113.56147 * 268.63508 * 16 13 12 27 27 H 1.09008 * 113.55442 * 39.36710 * 16 13 12 28 28 H 1.09000 * 117.49957 * 214.98080 * 17 9 7 29 29 H 1.08996 * 117.49599 * 0.02562 * 17 9 7 30 30 H 1.09005 * 117.50286 * 252.51361 * 18 17 9 31 31 H 1.09001 * 117.51845 * 107.48081 * 18 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0400 -1.2196 -0.3067 9 6 1.3134 -2.4633 0.4262 10 6 0.3703 -2.3310 1.6237 11 8 1.0972 -2.5678 2.8309 12 7 0.2999 -2.5279 4.0005 13 6 0.8170 -2.8067 5.1371 14 6 2.2015 -3.1228 5.6622 15 6 1.5214 -3.8974 6.7979 16 6 0.3167 -2.9743 6.5563 17 6 0.9296 -3.4611 -0.6684 18 6 2.0892 -3.7739 0.2794 19 1 -0.4849 0.8364 -0.0784 20 1 -0.0515 -1.3262 1.6446 21 1 -0.4343 -3.0610 1.5349 22 1 2.7866 -3.7556 4.9949 23 1 2.7500 -2.2441 6.0015 24 1 1.9925 -3.7607 7.7713 25 1 1.3295 -4.9434 6.5590 26 1 0.3481 -2.0549 7.1408 27 1 -0.6439 -3.4854 6.6221 28 1 0.0052 -4.0232 -0.5355 29 1 1.1774 -3.1995 -1.6971 30 1 3.0996 -3.7180 -0.1257 31 1 1.9279 -4.5416 1.0362 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853668999.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:58 Heat of formation + Delta-G solvation = 60.165934 kcal Electronic energy + Delta-G solvation = -13514.401956 eV Core-core repulsion = 11185.602316 eV Total energy + Delta-G solvation = -2328.799640 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.60223 -37.10655 -35.18211 -32.18295 -31.03870 -26.09265 -25.69145 -24.82245 -22.72975 -21.13302 -19.09321 -18.39474 -16.34150 -16.23842 -15.50790 -14.79876 -14.45318 -14.07157 -13.38083 -12.93165 -12.46717 -12.37972 -12.09915 -11.65379 -11.37010 -11.00541 -10.90491 -10.63142 -10.50685 -10.33866 -10.23320 -9.53413 -9.20091 -8.99975 -8.66751 -8.42485 -8.03939 -6.10575 -4.06829 2.52025 3.19947 3.27255 3.35239 3.41350 4.37174 4.52070 4.67058 4.97689 5.14308 5.28450 5.51084 5.64293 5.65225 5.80308 5.84145 6.07271 6.17360 6.24414 6.38239 6.54236 6.68793 6.73951 6.89929 7.07572 7.32431 7.46742 7.57467 7.91934 8.35924 8.40930 8.86026 9.49394 10.94602 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.030248 B = 0.008862 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.468806 B = 3158.748226 C = 3634.391205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.071 3.929 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.493 4.493 8 H 0.064 0.936 9 C 0.054 3.946 10 C 0.104 3.896 11 O -0.221 6.221 12 N -0.314 5.314 13 C 0.073 3.927 14 C -0.130 4.130 15 C -0.134 4.134 16 C -0.068 4.068 17 C -0.189 4.189 18 C -0.200 4.200 19 H 0.264 0.736 20 H 0.098 0.902 21 H 0.023 0.977 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 -5.173 10.938 12.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.529 4.529 8 H 0.082 0.918 9 C 0.052 3.948 10 C 0.028 3.972 11 O -0.237 6.237 12 N -0.055 5.055 13 C -0.122 4.122 14 C -0.170 4.170 15 C -0.173 4.173 16 C -0.106 4.106 17 C -0.227 4.227 18 C -0.238 4.238 19 H 0.074 0.926 20 H 0.116 0.884 21 H 0.042 0.958 22 H 0.096 0.904 23 H 0.116 0.884 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.591 -4.798 10.473 11.535 hybrid contribution 0.955 0.728 -0.107 1.205 sum 1.546 -4.070 10.366 11.243 Atomic orbital electron populations 1.69934 1.06197 1.27226 1.47721 1.24990 0.94734 0.99282 0.94222 0.86615 0.80345 0.83103 0.78224 1.20531 1.20957 1.19591 1.20488 0.97327 0.90038 1.45096 0.91792 1.18841 0.95823 0.89076 0.91035 1.22369 0.93073 1.02306 0.79417 1.89973 1.31618 1.90930 1.11170 1.75598 1.24924 1.10962 0.94058 1.25873 0.97344 0.95450 0.93510 1.22620 0.95924 1.00844 0.97620 1.22620 0.96925 0.98775 0.98947 1.22169 0.99321 1.00289 0.88866 1.22987 0.96912 1.06158 0.96625 1.22769 0.95928 1.02056 1.03022 0.92592 0.88434 0.95844 0.90385 0.88394 0.90172 0.89686 0.88033 0.90066 0.91627 0.89875 0.90499 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.20 11.36 55.43 0.63 -24.57 16 2 C 0.07 2.00 4.98 -17.82 -0.09 1.91 16 3 Si 0.89 21.53 29.58 -169.99 -5.03 16.50 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.49 -14.05 8.97 -34.45 -0.31 -14.36 16 8 H 0.06 1.80 7.89 -52.48 -0.41 1.39 16 9 C 0.05 1.44 1.97 -155.66 -0.31 1.13 16 10 C 0.10 2.75 6.15 37.16 0.23 2.98 16 11 O -0.22 -5.56 11.18 -11.47 -0.13 -5.69 16 12 N -0.31 -6.89 11.37 35.92 0.41 -6.48 16 13 C 0.07 1.25 8.57 -78.25 -0.67 0.58 16 14 C -0.13 -1.78 7.94 -27.56 -0.22 -2.00 16 15 C -0.13 -1.35 8.17 -26.20 -0.21 -1.56 16 16 C -0.07 -0.78 7.96 -27.40 -0.22 -0.99 16 17 C -0.19 -4.51 9.88 -26.73 -0.26 -4.77 16 18 C -0.20 -4.67 9.78 -26.73 -0.26 -4.93 16 19 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 20 H 0.10 2.82 5.60 -51.93 -0.29 2.53 16 21 H 0.02 0.59 7.88 -51.93 -0.41 0.18 16 22 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 23 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 29 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 30 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 270.15 15.07 4.07 4.07 Total: -1.00 -31.04 270.15 -6.84 -37.88 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -4.47 Total: 0.30 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -2.32 Total: -22.01 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 1.04 Total: -31.05 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.13 Total: -5.69 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.04 -6.84 -37.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853668999.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.042 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds