Wall clock time and date at job start Sun Mar 29 2020 21:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47535 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99476 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00194 * 180.02562 * 11 10 9 14 14 C 1.46507 * 120.00057 * 179.97438 * 13 11 10 15 15 H 1.08998 * 110.34455 * 324.16935 * 14 13 11 16 16 C 1.51107 * 110.38384 * 86.44775 * 14 13 11 17 17 C 1.30536 * 111.09849 * 102.37925 * 16 14 13 18 18 C 1.51103 * 111.10628 * 359.97438 * 17 16 14 19 19 C 1.54630 * 110.38964 * 201.75305 * 14 13 11 20 20 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 22 22 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 23 23 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 24 24 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 25 25 H 0.97000 * 120.00347 * 359.97438 * 13 11 10 26 26 H 1.07998 * 124.45165 * 282.39695 * 16 14 13 27 27 H 1.07995 * 124.44499 * 179.97438 * 17 16 14 28 28 H 1.08994 * 110.38757 * 135.24570 * 18 17 16 29 29 H 1.09003 * 110.38843 * 257.63028 * 18 17 16 30 30 H 1.09000 * 111.03423 * 23.85500 * 19 14 13 31 31 H 1.09004 * 111.03706 * 147.78667 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4920 -4.9672 0.0012 12 8 0.2792 -4.9672 -0.0006 13 7 2.1659 -6.1343 0.0026 14 6 1.4335 -7.4031 0.0026 15 1 0.5258 -7.3167 0.5998 16 6 1.0959 -7.8159 -1.4113 17 6 1.9017 -8.7526 -1.8324 18 6 2.9113 -9.1201 -0.7698 19 6 2.3295 -8.5424 0.5414 20 1 -0.4850 -0.8401 -0.0004 21 1 0.6241 -2.5566 0.8903 22 1 0.6248 -2.5571 -0.8896 23 1 2.8727 -3.6046 -0.8877 24 1 2.8714 -3.6038 0.8922 25 1 3.1359 -6.1343 0.0037 26 1 0.2937 -7.3915 -1.9966 27 1 1.8532 -9.2054 -2.8116 28 1 3.0083 -10.2033 -0.6967 29 1 3.8771 -8.6654 -0.9901 30 1 3.1203 -8.1493 1.1803 31 1 1.7371 -9.2895 1.0697 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855432490.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:29 Heat of formation + Delta-G solvation = -63.422337 kcal Electronic energy + Delta-G solvation = -13263.635214 eV Core-core repulsion = 10929.476385 eV Total energy + Delta-G solvation = -2334.158830 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.13530 -39.15800 -35.95305 -34.65085 -32.79370 -29.98787 -28.64645 -26.83179 -24.06483 -21.74137 -21.48249 -19.76797 -19.05775 -17.97953 -17.31448 -16.76259 -16.39478 -15.62678 -15.43499 -14.89980 -14.46933 -14.12849 -13.57696 -13.29450 -12.90954 -12.65648 -12.53396 -12.28608 -12.13526 -12.04486 -12.00229 -11.85595 -11.05580 -10.71029 -10.56018 -10.15640 -10.02758 -8.70390 -6.42349 1.13445 1.54401 1.62644 1.64771 1.83234 2.36390 2.61150 3.16420 3.55086 3.67970 3.96102 4.18008 4.28932 4.36088 4.39704 4.49462 4.67950 4.84294 4.91691 4.93739 5.11746 5.17888 5.27416 5.35686 5.50778 5.54316 5.82962 5.92648 6.16238 6.49500 6.56546 7.27768 7.44261 8.69329 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.076379 B = 0.005537 C = 0.005404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.506225 B = 5055.458473 C = 5179.899288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.046 4.046 3 Si 1.126 2.874 4 H -0.288 1.288 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.619 4.619 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.113 4.113 11 C 0.510 3.490 12 O -0.592 6.592 13 N -0.705 5.705 14 C 0.152 3.848 15 H 0.059 0.941 16 C -0.212 4.212 17 C -0.130 4.130 18 C -0.100 4.100 19 C -0.121 4.121 20 H 0.250 0.750 21 H -0.021 1.021 22 H -0.023 1.023 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.416 0.584 26 H 0.097 0.903 27 H 0.142 0.858 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.100 -18.587 -0.779 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.242 4.242 3 Si 0.946 3.054 4 H -0.213 1.213 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.657 4.657 8 H 0.086 0.914 9 C -0.011 4.011 10 C -0.153 4.153 11 C 0.298 3.702 12 O -0.472 6.472 13 N -0.358 5.358 14 C 0.048 3.952 15 H 0.078 0.922 16 C -0.231 4.231 17 C -0.149 4.149 18 C -0.136 4.136 19 C -0.159 4.159 20 H 0.059 0.941 21 H -0.003 1.003 22 H -0.005 1.005 23 H 0.120 0.880 24 H 0.124 0.876 25 H 0.253 0.747 26 H 0.115 0.885 27 H 0.160 0.840 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.115 0.885 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.067 -16.987 -0.754 19.760 hybrid contribution -0.391 -1.504 -0.190 1.565 sum 9.676 -18.491 -0.943 20.890 Atomic orbital electron populations 1.70902 1.08405 1.29644 1.48749 1.27714 0.96489 1.07515 0.92508 0.82855 0.73966 0.70230 0.78383 1.21329 1.18761 1.18862 1.22505 0.95225 0.92667 1.55308 0.91388 1.18864 0.94404 0.94013 0.93862 1.21514 0.99027 0.89861 1.04856 1.21326 0.87844 0.86927 0.74085 1.90637 1.16757 1.88434 1.51407 1.45968 1.10675 1.04244 1.74920 1.20837 0.95822 0.83974 0.94539 0.92236 1.23502 1.01291 1.00248 0.98081 1.23672 0.94995 0.96101 1.00103 1.21504 0.97989 1.02739 0.91405 1.22745 0.99159 0.95841 0.98150 0.94062 1.00309 1.00487 0.87953 0.87638 0.74695 0.88526 0.84000 0.88334 0.88969 0.88489 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.25 13.65 21.45 0.29 -61.95 16 2 C -0.05 -2.76 5.46 84.65 0.46 -2.30 16 3 Si 1.13 50.79 29.90 68.60 2.05 52.84 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.62 -36.30 9.11 25.60 0.23 -36.07 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 9 C 0.03 1.49 3.57 29.85 0.11 1.60 16 10 C -0.11 -4.69 5.64 29.85 0.17 -4.53 16 11 C 0.51 20.52 7.82 87.66 0.69 21.21 16 12 O -0.59 -30.14 15.68 -3.04 -0.05 -30.19 16 13 N -0.71 -19.83 5.11 -442.83 -2.26 -22.10 16 14 C 0.15 3.94 3.20 44.93 0.14 4.09 16 15 H 0.06 1.89 7.65 -2.39 -0.02 1.87 16 16 C -0.21 -5.45 10.40 26.25 0.27 -5.17 16 17 C -0.13 -2.33 10.78 26.25 0.28 -2.05 16 18 C -0.10 -1.25 6.81 30.54 0.21 -1.04 16 19 C -0.12 -1.86 6.79 31.71 0.22 -1.65 16 20 H 0.25 17.30 7.22 -92.70 -0.67 16.63 16 21 H -0.02 -1.36 7.97 -2.39 -0.02 -1.38 16 22 H -0.02 -1.48 7.96 -2.39 -0.02 -1.50 16 23 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 24 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 25 H 0.42 8.44 8.57 -92.71 -0.79 7.65 16 26 H 0.10 2.95 8.06 -2.91 -0.02 2.92 16 27 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.21 8.03 -2.39 -0.02 1.19 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -79.42 267.20 3.22 -76.19 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.41 Total: 11.12 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 2.78 Total: -25.92 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -1.97 Total: -84.05 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.05 Total: -30.19 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.84 kcal Total: -79.42 3.22 -76.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855432490.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.770 kcal (2) G-P(sol) polarization free energy of solvation -79.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds