Wall clock time and date at job start Sun Mar 29 2020 21:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.51586 * 135.77970 * 2 1 4 4 C 1.53846 * 86.75517 * 154.84927 * 3 2 1 5 5 C 1.53000 * 113.65329 * 270.22186 * 4 3 2 6 6 C 1.50695 * 113.66017 * 139.27298 * 4 3 2 7 7 O 1.21285 * 120.00087 * 359.97438 * 6 4 3 8 8 N 1.34776 * 120.00245 * 180.02562 * 6 4 3 9 9 C 1.46496 * 120.00006 * 179.97438 * 8 6 4 10 10 C 1.50706 * 109.47106 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47288 * 59.99994 * 14 12 10 16 16 H 1.48503 * 109.47086 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46819 * 299.99648 * 14 12 10 18 18 C 1.51582 * 135.78362 * 180.02562 * 2 1 3 19 19 H 1.07993 * 120.00330 * 359.97438 * 1 2 3 20 20 H 1.07997 * 119.99551 * 179.97438 * 1 2 3 21 21 H 1.08995 * 113.66455 * 40.37950 * 3 2 1 22 22 H 1.08998 * 113.75121 * 269.32167 * 3 2 1 23 23 H 1.09002 * 109.47164 * 298.33079 * 5 4 3 24 24 H 1.08990 * 109.47755 * 58.33523 * 5 4 3 25 25 H 1.09000 * 109.46728 * 178.33713 * 5 4 3 26 26 H 0.96998 * 119.99803 * 359.97438 * 8 6 4 27 27 H 1.09001 * 109.47001 * 59.99676 * 9 8 6 28 28 H 1.09000 * 109.47574 * 299.99892 * 9 8 6 29 29 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 30 30 H 1.08993 * 113.66729 * 90.68881 * 18 2 1 31 31 H 1.08993 * 113.66570 * 319.61330 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0572 0.0000 4 6 3.3036 0.0000 0.6528 5 6 3.2461 0.0015 2.1817 6 6 4.7130 0.0001 0.1194 7 8 5.0342 0.7878 -0.7451 8 7 5.6163 -0.8759 0.6022 9 6 6.9863 -0.8761 0.0832 10 6 7.7888 -1.9420 0.7840 11 1 7.3245 -2.5578 1.5401 12 6 9.1155 -2.1309 0.4600 13 7 9.6809 -1.3805 -0.4603 14 14 10.1099 -3.4525 1.3282 15 1 9.4889 -4.7792 1.0850 16 1 11.4987 -3.4527 0.8022 17 1 10.1327 -3.1765 2.7872 18 6 2.3964 -1.0571 -0.0005 19 1 -0.5400 0.9352 0.0004 20 1 -0.5399 -0.9353 -0.0004 21 1 2.1795 1.9073 0.6467 22 1 2.7192 1.3549 -0.9976 23 1 3.5890 0.9656 2.5573 24 1 2.2203 -0.1711 2.5070 25 1 3.8884 -0.7889 2.5701 26 1 5.3594 -1.5061 1.2933 27 1 7.4424 0.0977 0.2613 28 1 6.9692 -1.0789 -0.9876 29 1 10.6143 -1.5137 -0.6885 30 1 2.7183 -1.3532 -0.9988 31 1 2.1797 -1.9074 0.6460 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867873585.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:42 Heat of formation + Delta-G solvation = -30.521072 kcal Electronic energy + Delta-G solvation = -13485.248878 eV Core-core repulsion = 11152.516754 eV Total energy + Delta-G solvation = -2332.732124 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.52857 -38.85384 -36.17159 -34.41081 -32.40933 -29.41878 -28.50270 -26.88626 -25.42088 -23.31539 -20.78332 -18.77186 -18.56814 -17.52235 -17.11466 -16.33483 -16.28774 -15.54739 -15.24274 -14.98189 -14.39335 -14.07008 -13.92415 -13.37186 -13.13439 -12.98037 -12.80611 -12.68896 -12.33188 -12.23512 -11.82514 -11.51419 -11.12918 -10.80410 -10.61117 -9.98586 -9.85277 -8.29966 -6.47273 1.33819 1.42741 1.47050 1.55339 1.70665 2.32365 2.60498 3.04687 3.38016 3.52456 3.60130 3.98597 4.08970 4.46628 4.68198 4.78928 4.79421 4.90162 4.97020 5.01979 5.09690 5.20870 5.21926 5.29530 5.47101 5.59157 5.67365 5.83149 6.03479 6.63172 6.88615 7.21915 7.45965 8.82160 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.062593 B = 0.006456 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.227817 B = 4336.304936 C = 4530.364978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.156 4.156 3 C -0.087 4.087 4 C -0.104 4.104 5 C -0.120 4.120 6 C 0.508 3.492 7 O -0.605 6.605 8 N -0.702 5.702 9 C 0.265 3.735 10 C -0.557 4.557 11 H 0.084 0.916 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.986 3.014 15 H -0.262 1.262 16 H -0.285 1.285 17 H -0.261 1.261 18 C -0.084 4.084 19 H 0.120 0.880 20 H 0.124 0.876 21 H 0.087 0.913 22 H 0.077 0.923 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.407 0.593 27 H -0.014 1.014 28 H -0.014 1.014 29 H 0.269 0.731 30 H 0.077 0.923 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.593 -1.299 6.236 17.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.156 4.156 3 C -0.124 4.124 4 C -0.107 4.107 5 C -0.177 4.177 6 C 0.295 3.705 7 O -0.487 6.487 8 N -0.351 5.351 9 C 0.142 3.858 10 C -0.595 4.595 11 H 0.102 0.898 12 C -0.196 4.196 13 N -0.570 5.570 14 Si 0.809 3.191 15 H -0.186 1.186 16 H -0.211 1.211 17 H -0.186 1.186 18 C -0.121 4.121 19 H 0.138 0.862 20 H 0.142 0.858 21 H 0.106 0.894 22 H 0.095 0.905 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.088 0.912 26 H 0.243 0.757 27 H 0.004 0.996 28 H 0.004 0.996 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.164 -0.725 5.545 17.104 hybrid contribution 1.087 -0.437 0.043 1.172 sum -15.076 -1.162 5.589 16.121 Atomic orbital electron populations 1.23149 0.92409 1.03631 0.99641 1.22613 0.94053 0.96422 1.02487 1.22176 0.92932 0.96330 1.00964 1.22091 0.88460 1.01372 0.98823 1.21569 1.04192 1.02900 0.89012 1.21230 0.88103 0.79647 0.81491 1.90607 1.81532 1.41980 1.34612 1.46209 1.11399 1.36392 1.41101 1.18561 0.78446 0.95686 0.93117 1.21575 0.96305 1.18591 1.23008 0.89801 1.26087 0.98928 0.98928 0.95617 1.70143 1.13585 1.40923 1.32376 0.85185 0.76762 0.78397 0.78741 1.18605 1.21058 1.18568 1.22222 0.92701 0.96406 1.00798 0.86210 0.85765 0.89419 0.90451 0.92070 0.88870 0.91215 0.75684 0.99577 0.99632 0.92220 0.90483 0.87756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 14.71 67.78 1.00 -1.48 16 2 C -0.16 -3.43 6.60 -15.98 -0.11 -3.53 16 3 C -0.09 -2.40 6.98 30.42 0.21 -2.18 16 4 C -0.10 -3.07 1.27 -52.41 -0.07 -3.14 16 5 C -0.12 -2.71 8.99 71.98 0.65 -2.07 16 6 C 0.51 21.50 6.93 87.66 0.61 22.11 16 7 O -0.60 -31.58 15.90 -3.05 -0.05 -31.63 16 8 N -0.70 -30.90 5.43 -466.79 -2.54 -33.44 16 9 C 0.26 14.94 5.43 85.64 0.46 15.41 16 10 C -0.56 -30.73 9.28 25.60 0.24 -30.49 16 11 H 0.08 4.16 7.60 -2.91 -0.02 4.13 16 12 C 0.00 0.22 5.46 84.65 0.46 0.69 16 13 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 14 Si 0.99 42.45 29.54 68.60 2.03 44.48 16 15 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 16 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 18 C -0.08 -2.09 7.18 30.42 0.22 -1.87 16 19 H 0.12 1.62 8.06 -2.91 -0.02 1.59 16 20 H 0.12 1.57 8.06 -2.91 -0.02 1.55 16 21 H 0.09 2.12 8.10 -2.39 -0.02 2.10 16 22 H 0.08 2.56 7.42 -2.39 -0.02 2.54 16 23 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.09 1.61 7.70 -2.39 -0.02 1.60 16 25 H 0.07 1.52 7.04 -2.39 -0.02 1.50 16 26 H 0.41 14.92 7.22 -92.71 -0.67 14.25 16 27 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 29 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 30 H 0.08 2.19 8.09 -2.39 -0.02 2.17 16 31 H 0.10 2.05 8.10 -2.39 -0.02 2.03 16 Total: -1.00 -71.24 268.42 3.84 -67.40 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.44 Total: 16.32 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 3.67 Total: -6.55 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -2.25 Total: -90.02 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.05 Total: -31.63 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -71.24 3.84 -67.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873585.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.880 kcal (2) G-P(sol) polarization free energy of solvation -71.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds