Wall clock time and date at job start Sun Mar 29 2020 21:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37100 * 119.99808 * 2 1 4 4 H 1.08000 * 119.99486 * 213.47899 * 3 2 1 5 5 C 1.38953 * 120.00031 * 33.19811 * 3 2 1 6 6 N 1.31410 * 120.00065 * 9.48358 * 5 3 2 7 7 Si 1.86802 * 120.00057 * 189.48847 * 5 3 2 8 8 H 1.48501 * 109.46804 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47371 * 119.99794 * 7 5 3 10 10 H 1.48500 * 109.46914 * 240.00294 * 7 5 3 11 11 C 1.34773 * 119.99933 * 179.97438 * 2 1 3 12 12 O 1.21285 * 120.00246 * 7.03403 * 11 2 1 13 13 C 1.50703 * 119.99558 * 187.03915 * 11 2 1 14 14 C 1.53002 * 115.54831 * 163.47948 * 13 11 2 15 15 C 1.52990 * 117.50139 * 34.32348 * 14 13 11 16 16 C 1.52995 * 117.49871 * 325.66139 * 14 13 11 17 17 C 1.52997 * 117.50108 * 17.80574 * 13 11 2 18 18 C 1.52998 * 117.49913 * 309.14030 * 13 11 2 19 19 H 1.09000 * 109.46992 * 54.25467 * 1 2 3 20 20 H 1.09001 * 109.46776 * 174.24992 * 1 2 3 21 21 H 1.09002 * 109.47693 * 294.25103 * 1 2 3 22 22 H 0.97004 * 120.00058 * 179.97438 * 6 5 3 23 23 H 1.09007 * 115.54997 * 179.97438 * 14 13 11 24 24 H 1.09002 * 117.50162 * 0.02562 * 15 14 13 25 25 H 1.09004 * 117.50465 * 145.02355 * 15 14 13 26 26 H 1.09002 * 117.50421 * 214.98417 * 16 14 13 27 27 H 1.09005 * 117.50134 * 359.97438 * 16 14 13 28 28 H 1.08998 * 117.49886 * 359.97438 * 17 13 11 29 29 H 1.09005 * 117.49768 * 145.02577 * 17 13 11 30 30 H 1.08998 * 117.50461 * 214.97851 * 18 13 11 31 31 H 1.08999 * 117.50188 * 359.97438 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0960 1.2649 -0.5160 5 6 1.6257 2.2925 0.6589 6 7 0.5738 2.1567 1.4347 7 14 2.4156 3.9713 0.4418 8 1 3.5776 3.8567 -0.4758 9 1 1.4228 4.9151 -0.1315 10 1 2.8749 4.4765 1.7605 11 6 2.1388 -1.1672 0.0005 12 8 1.5393 -2.2137 -0.1276 13 6 3.6373 -1.1719 0.1605 14 6 4.2562 -2.5189 0.5396 15 6 3.6021 -3.7810 -0.0257 16 6 3.4450 -3.4357 1.4572 17 6 4.2915 0.0903 0.7259 18 6 4.4487 -0.2551 -0.7571 19 1 -0.3633 0.6003 -0.8341 20 1 -0.3633 -1.0225 -0.1030 21 1 -0.3634 0.4221 0.9370 22 1 0.2077 2.9281 1.8949 23 1 5.3402 -2.5224 0.6549 24 1 2.7310 -3.6519 -0.6682 25 1 4.2554 -4.6152 -0.2817 26 1 3.9951 -4.0428 2.1763 27 1 2.4705 -3.0793 1.7912 28 1 3.6381 0.9243 0.9818 29 1 5.1631 -0.0389 1.3677 30 1 5.4235 -0.6111 -1.0903 31 1 3.8987 0.3513 -1.4768 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885360779.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:17 Heat of formation + Delta-G solvation = 49.884205 kcal Electronic energy + Delta-G solvation = -14472.088953 eV Core-core repulsion = 12142.843464 eV Total energy + Delta-G solvation = -2329.245489 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.63296 -36.30612 -35.55779 -33.76349 -31.38726 -26.46268 -25.30738 -23.07717 -21.93380 -21.24630 -20.63975 -18.73127 -17.32796 -15.49936 -14.96877 -14.40498 -14.10336 -13.73365 -13.61465 -13.00625 -12.38011 -11.98203 -11.65142 -11.35632 -11.08272 -10.74546 -10.69841 -10.61784 -10.48535 -10.38328 -10.06255 -10.00371 -9.29593 -9.02826 -8.60738 -8.14370 -7.53800 -6.28730 -4.04607 3.06315 3.17771 3.20676 3.69982 4.03903 4.40967 4.81194 4.94027 5.12507 5.21172 5.52821 5.70274 5.75271 6.04824 6.09707 6.14021 6.28730 6.29642 6.54971 6.64198 6.77798 6.81623 6.95216 6.99635 7.14597 7.21441 7.44081 7.59345 7.88628 8.37387 9.04374 9.52529 9.93716 10.62729 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.041111 B = 0.012224 C = 0.010367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.914486 B = 2289.973324 C = 2700.192359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.445 5.445 3 C -0.347 4.347 4 H 0.117 0.883 5 C 0.036 3.964 6 N -0.865 5.865 7 Si 0.914 3.086 8 H -0.264 1.264 9 H -0.280 1.280 10 H -0.278 1.278 11 C 0.503 3.497 12 O -0.601 6.601 13 C -0.106 4.106 14 C -0.108 4.108 15 C -0.176 4.176 16 C -0.171 4.171 17 C -0.183 4.183 18 C -0.170 4.170 19 H 0.033 0.967 20 H 0.046 0.954 21 H 0.094 0.906 22 H 0.268 0.732 23 H 0.096 0.904 24 H 0.124 0.876 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.164 0.836 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.675 -1.698 -1.106 6.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.162 5.162 3 C -0.474 4.474 4 H 0.134 0.866 5 C -0.170 4.170 6 N -0.503 5.503 7 Si 0.741 3.259 8 H -0.188 1.188 9 H -0.205 1.205 10 H -0.204 1.204 11 C 0.292 3.708 12 O -0.488 6.488 13 C -0.109 4.109 14 C -0.127 4.127 15 C -0.212 4.212 16 C -0.207 4.207 17 C -0.219 4.219 18 C -0.207 4.207 19 H 0.052 0.948 20 H 0.065 0.935 21 H 0.112 0.888 22 H 0.079 0.921 23 H 0.114 0.886 24 H 0.142 0.858 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.180 0.820 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.202 -2.049 -1.047 5.688 hybrid contribution 0.399 0.955 -0.013 1.035 sum 5.601 -1.094 -1.061 5.805 Atomic orbital electron populations 1.21713 0.81408 0.99167 1.03307 1.43348 1.05327 1.04472 1.63082 1.20239 1.07352 0.87249 1.32585 0.86583 1.25496 0.96565 1.00064 0.94843 1.69825 1.22510 1.30850 1.27066 0.86043 0.79386 0.81991 0.78522 1.18837 1.20526 1.20425 1.19229 0.87406 0.83610 0.80509 1.90405 1.69992 1.31603 1.56780 1.20580 0.92267 0.91051 1.07045 1.21335 0.96295 0.89326 1.05702 1.23254 1.03805 0.96525 0.97625 1.22834 1.02021 1.02826 0.93067 1.24376 1.02000 1.01160 0.94347 1.23001 0.99934 1.02906 0.94873 0.94812 0.93492 0.88835 0.92103 0.88609 0.85832 0.90892 0.90360 0.88267 0.81952 0.90818 0.89760 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.17 9.62 59.85 0.58 2.75 16 2 N -0.44 -11.37 2.97 -122.36 -0.36 -11.73 16 3 C -0.35 -8.53 5.84 -14.93 -0.09 -8.62 16 4 H 0.12 2.68 3.36 -52.49 -0.18 2.51 16 5 C 0.04 0.88 5.12 -17.47 -0.09 0.79 16 6 N -0.87 -22.41 10.74 55.50 0.60 -21.81 16 7 Si 0.91 18.88 29.56 -169.99 -5.03 13.86 16 8 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 9 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 10 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 11 C 0.50 12.52 6.95 -10.99 -0.08 12.44 16 12 O -0.60 -15.72 11.56 5.55 0.06 -15.65 16 13 C -0.11 -2.26 2.46 -155.66 -0.38 -2.64 16 14 C -0.11 -2.05 5.84 -90.63 -0.53 -2.58 16 15 C -0.18 -3.28 9.68 -26.70 -0.26 -3.54 16 16 C -0.17 -3.22 9.70 -26.70 -0.26 -3.48 16 17 C -0.18 -3.64 9.06 -26.69 -0.24 -3.88 16 18 C -0.17 -3.20 9.13 -26.69 -0.24 -3.44 16 19 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 20 H 0.05 1.14 6.92 -51.93 -0.36 0.78 16 21 H 0.09 2.44 5.94 -51.93 -0.31 2.14 16 22 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 23 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 24 H 0.12 2.66 5.74 -51.93 -0.30 2.37 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.10 2.16 6.83 -51.93 -0.35 1.81 16 28 H 0.16 3.63 4.31 -52.25 -0.23 3.41 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.10 2.05 6.31 -51.93 -0.33 1.72 16 LS Contribution 246.13 15.07 3.71 3.71 Total: -1.00 -27.27 246.13 -6.33 -33.61 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -3.72 Total: 10.23 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -1.59 Total: -12.21 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.23 Total: -33.55 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: 0.06 Total: -15.65 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.86 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.27 -6.33 -33.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885360779.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.492 kcal (2) G-P(sol) polarization free energy of solvation -27.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds