Wall clock time and date at job start Sun Mar 29 2020 21:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37100 * 119.99808 * 2 1 4 4 H 1.08000 * 119.99486 * 213.47899 * 3 2 1 5 5 C 1.38953 * 120.00031 * 33.19811 * 3 2 1 6 6 N 1.31410 * 120.00065 * 9.48358 * 5 3 2 7 7 Si 1.86802 * 120.00057 * 189.48847 * 5 3 2 8 8 H 1.48501 * 109.46804 * 359.97438 * 7 5 3 9 9 H 1.48495 * 109.47371 * 119.99794 * 7 5 3 10 10 H 1.48500 * 109.46914 * 240.00294 * 7 5 3 11 11 C 1.34773 * 119.99933 * 179.97438 * 2 1 3 12 12 O 1.21285 * 120.00246 * 7.03403 * 11 2 1 13 13 C 1.50703 * 119.99558 * 187.03915 * 11 2 1 14 14 C 1.53002 * 115.54831 * 163.47948 * 13 11 2 15 15 C 1.52990 * 117.50139 * 34.32348 * 14 13 11 16 16 C 1.52995 * 117.49871 * 325.66139 * 14 13 11 17 17 C 1.52997 * 117.50108 * 17.80574 * 13 11 2 18 18 C 1.52998 * 117.49913 * 309.14030 * 13 11 2 19 19 H 1.09000 * 109.46992 * 54.25467 * 1 2 3 20 20 H 1.09001 * 109.46776 * 174.24992 * 1 2 3 21 21 H 1.09002 * 109.47693 * 294.25103 * 1 2 3 22 22 H 0.97004 * 120.00058 * 179.97438 * 6 5 3 23 23 H 1.09007 * 115.54997 * 179.97438 * 14 13 11 24 24 H 1.09002 * 117.50162 * 0.02562 * 15 14 13 25 25 H 1.09004 * 117.50465 * 145.02355 * 15 14 13 26 26 H 1.09002 * 117.50421 * 214.98417 * 16 14 13 27 27 H 1.09005 * 117.50134 * 359.97438 * 16 14 13 28 28 H 1.08998 * 117.49886 * 359.97438 * 17 13 11 29 29 H 1.09005 * 117.49768 * 145.02577 * 17 13 11 30 30 H 1.08998 * 117.50461 * 214.97851 * 18 13 11 31 31 H 1.08999 * 117.50188 * 359.97438 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.0960 1.2649 -0.5160 5 6 1.6257 2.2925 0.6589 6 7 0.5738 2.1567 1.4347 7 14 2.4156 3.9713 0.4418 8 1 3.5776 3.8567 -0.4758 9 1 1.4228 4.9151 -0.1315 10 1 2.8749 4.4765 1.7605 11 6 2.1388 -1.1672 0.0005 12 8 1.5393 -2.2137 -0.1276 13 6 3.6373 -1.1719 0.1605 14 6 4.2562 -2.5189 0.5396 15 6 3.6021 -3.7810 -0.0257 16 6 3.4450 -3.4357 1.4572 17 6 4.2915 0.0903 0.7259 18 6 4.4487 -0.2551 -0.7571 19 1 -0.3633 0.6003 -0.8341 20 1 -0.3633 -1.0225 -0.1030 21 1 -0.3634 0.4221 0.9370 22 1 0.2077 2.9281 1.8949 23 1 5.3402 -2.5224 0.6549 24 1 2.7310 -3.6519 -0.6682 25 1 4.2554 -4.6152 -0.2817 26 1 3.9951 -4.0428 2.1763 27 1 2.4705 -3.0793 1.7912 28 1 3.6381 0.9243 0.9818 29 1 5.1631 -0.0389 1.3677 30 1 5.4235 -0.6111 -1.0903 31 1 3.8987 0.3513 -1.4768 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885360779.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:17 Heat of formation + Delta-G solvation = 34.792573 kcal Electronic energy + Delta-G solvation = -14472.743376 eV Core-core repulsion = 12142.843464 eV Total energy + Delta-G solvation = -2329.899911 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.38643 -37.97914 -37.37038 -35.44902 -33.31018 -28.42079 -27.17143 -24.70661 -23.42716 -22.73554 -22.35737 -20.57541 -19.11872 -17.24752 -16.61600 -16.21240 -15.86938 -15.47747 -15.37036 -14.61567 -14.10526 -13.86936 -13.28464 -13.09036 -12.88843 -12.63422 -12.29307 -12.17581 -12.07783 -11.95910 -11.82495 -11.49151 -10.95188 -10.72209 -10.15479 -10.00813 -9.50010 -8.16875 -5.97502 1.41989 1.49597 1.61979 1.91152 2.31046 2.84040 3.02320 3.14327 3.51658 3.71904 3.98808 4.22423 4.29366 4.43812 4.56075 4.60984 4.74386 4.83564 4.88734 4.91320 5.09887 5.18579 5.29221 5.33903 5.43437 5.54047 5.61912 5.79292 6.00059 6.45370 7.14290 7.60586 8.01988 8.77331 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.041111 B = 0.012224 C = 0.010367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.914486 B = 2289.973324 C = 2700.192359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.461 5.461 3 C -0.355 4.355 4 H 0.133 0.867 5 C -0.009 4.009 6 N -0.902 5.902 7 Si 0.981 3.019 8 H -0.247 1.247 9 H -0.284 1.284 10 H -0.278 1.278 11 C 0.486 3.514 12 O -0.625 6.625 13 C -0.131 4.131 14 C -0.103 4.103 15 C -0.174 4.174 16 C -0.177 4.177 17 C -0.179 4.179 18 C -0.148 4.148 19 H 0.034 0.966 20 H 0.041 0.959 21 H 0.079 0.921 22 H 0.269 0.731 23 H 0.133 0.867 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.058 0.942 28 H 0.137 0.863 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.567 -1.423 -1.438 8.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.179 5.179 3 C -0.481 4.481 4 H 0.150 0.850 5 C -0.210 4.210 6 N -0.540 5.540 7 Si 0.805 3.195 8 H -0.170 1.170 9 H -0.210 1.210 10 H -0.203 1.203 11 C 0.277 3.723 12 O -0.513 6.513 13 C -0.134 4.134 14 C -0.121 4.121 15 C -0.211 4.211 16 C -0.214 4.214 17 C -0.216 4.216 18 C -0.185 4.185 19 H 0.052 0.948 20 H 0.060 0.940 21 H 0.098 0.902 22 H 0.079 0.921 23 H 0.151 0.849 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.076 0.924 28 H 0.155 0.845 29 H 0.122 0.878 30 H 0.140 0.860 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.104 -1.780 -1.389 8.412 hybrid contribution -0.569 0.814 0.091 0.997 sum 7.535 -0.966 -1.299 7.707 Atomic orbital electron populations 1.21539 0.82191 0.98561 1.02536 1.43654 1.05363 1.05422 1.63489 1.20658 1.07832 0.86999 1.32653 0.85044 1.26344 0.96932 1.03469 0.94287 1.69951 1.24065 1.31814 1.28200 0.85024 0.78802 0.77125 0.78589 1.16986 1.20984 1.20323 1.20057 0.89496 0.82990 0.79727 1.90393 1.71121 1.32284 1.57532 1.20657 0.89917 0.93198 1.09611 1.21506 0.97859 0.87820 1.04960 1.23166 1.03250 0.97974 0.96683 1.22799 1.00742 1.03823 0.94007 1.24244 1.02265 0.99234 0.95815 1.23077 1.00679 1.00875 0.93874 0.94760 0.94025 0.90248 0.92116 0.84888 0.89412 0.87344 0.87020 0.92373 0.84539 0.87786 0.85965 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.94 9.62 127.77 1.23 6.17 16 2 N -0.46 -24.06 2.97 -659.43 -1.96 -26.02 16 3 C -0.35 -17.39 5.84 84.04 0.49 -16.90 16 4 H 0.13 5.90 3.36 -2.91 -0.01 5.89 16 5 C -0.01 -0.42 5.12 84.93 0.43 0.01 16 6 N -0.90 -47.59 10.74 21.66 0.23 -47.36 16 7 Si 0.98 38.08 29.56 68.60 2.03 40.11 16 8 H -0.25 -8.79 7.11 99.48 0.71 -8.08 16 9 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 11 C 0.49 24.51 6.95 87.66 0.61 25.12 16 12 O -0.62 -33.75 11.56 -3.04 -0.04 -33.78 16 13 C -0.13 -5.32 2.46 -52.93 -0.13 -5.45 16 14 C -0.10 -3.60 5.84 -10.80 -0.06 -3.66 16 15 C -0.17 -6.18 9.68 30.61 0.30 -5.88 16 16 C -0.18 -6.42 9.70 30.62 0.30 -6.12 16 17 C -0.18 -6.64 9.06 30.62 0.28 -6.36 16 18 C -0.15 -5.08 9.13 30.62 0.28 -4.80 16 19 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 20 H 0.04 2.13 6.92 -2.39 -0.02 2.11 16 21 H 0.08 4.35 5.94 -2.39 -0.01 4.33 16 22 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 23 H 0.13 3.68 8.14 -2.38 -0.02 3.66 16 24 H 0.09 3.80 5.74 -2.39 -0.01 3.79 16 25 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 27 H 0.06 2.59 6.83 -2.38 -0.02 2.57 16 28 H 0.14 5.90 4.31 -2.69 -0.01 5.89 16 29 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 30 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.09 3.38 6.31 -2.39 -0.02 3.37 16 Total: -1.00 -59.90 246.13 5.12 -54.78 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 1.14 Total: 30.16 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: 3.72 Total: -17.88 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -1.73 Total: -73.38 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.04 Total: -33.78 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.11 kcal Total: -59.90 5.12 -54.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885360779.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.570 kcal (2) G-P(sol) polarization free energy of solvation -59.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds