Wall clock time and date at job start Sun Mar 29 2020 21:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46826 * 101.59917 * 3 2 1 5 5 N 1.46496 * 109.54277 * 304.89569 * 4 3 2 6 6 C 1.36938 * 120.00182 * 299.90129 * 5 4 3 7 7 H 1.07994 * 120.00433 * 354.12433 * 6 5 4 8 8 C 1.38819 * 119.99659 * 174.12535 * 6 5 4 9 9 N 1.31610 * 120.00182 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99738 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46769 * 270.00177 * 10 8 6 12 12 H 1.48506 * 109.47196 * 29.99539 * 10 8 6 13 13 H 1.48493 * 109.47371 * 149.99748 * 10 8 6 14 14 C 1.53173 * 109.54512 * 65.07675 * 4 3 2 15 15 C 1.53279 * 109.06210 * 176.84833 * 14 4 3 16 16 O 1.42897 * 109.46655 * 302.44518 * 15 14 4 17 17 C 1.42908 * 114.09347 * 61.15368 * 16 15 14 18 18 C 1.53081 * 109.41892 * 298.84385 * 17 16 15 19 19 H 4.44647 * 5.63462 * 180.02562 * 4 1 2 20 20 H 1.08995 * 109.47077 * 341.59905 * 3 2 1 21 21 H 1.09001 * 109.46707 * 221.59407 * 3 2 1 22 22 H 0.97002 * 119.99862 * 119.89830 * 5 4 3 23 23 H 0.97001 * 120.00379 * 180.02562 * 9 8 6 24 24 H 1.09001 * 109.52609 * 296.84254 * 14 4 3 25 25 H 1.09002 * 109.52384 * 57.03001 * 14 4 3 26 26 H 1.08999 * 109.45774 * 182.44676 * 15 14 4 27 27 H 1.09006 * 109.46896 * 62.45290 * 15 14 4 28 28 H 1.09010 * 109.47609 * 178.85846 * 17 16 15 29 29 H 1.08996 * 109.48832 * 58.83694 * 17 16 15 30 30 H 1.08994 * 109.52575 * 297.70760 * 18 17 16 31 31 H 1.09000 * 109.57526 * 177.54213 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.2909 -1.4131 5 7 2.5749 -0.6727 -2.3512 6 6 2.8064 -2.0124 -2.1876 7 1 3.4925 -2.3529 -1.4263 8 6 2.1593 -2.9329 -3.0006 9 7 1.3228 -2.5181 -3.9282 10 14 2.4745 -4.7605 -2.7771 11 1 3.6127 -5.1751 -3.6361 12 1 2.8017 -5.0361 -1.3550 13 1 1.2600 -5.5231 -3.1623 14 6 2.7525 1.7110 -1.8217 15 6 3.3354 2.0183 -3.2056 16 8 4.7554 1.8629 -3.1694 17 6 5.1896 0.5423 -2.8378 18 6 4.6831 0.1759 -1.4405 19 1 -1.0501 0.0002 0.0001 20 1 3.0098 -0.9743 0.3244 21 1 3.0089 0.7694 0.6822 22 1 2.0262 -0.3618 -3.0882 23 1 0.8703 -3.1612 -4.4961 24 1 1.6655 1.7850 -1.8573 25 1 3.1434 2.4239 -1.0957 26 1 3.0889 3.0428 -3.4841 27 1 2.9131 1.3308 -3.9386 28 1 6.2789 0.5037 -2.8514 29 1 4.7917 -0.1647 -3.5657 30 1 5.1129 0.8578 -0.7068 31 1 4.9756 -0.8468 -1.2025 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887124491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:44 Heat of formation + Delta-G solvation = 12.929810 kcal Electronic energy + Delta-G solvation = -14353.525073 eV Core-core repulsion = 12022.677121 eV Total energy + Delta-G solvation = -2330.847952 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.18826 -35.75296 -32.85601 -31.73446 -30.53701 -29.05844 -27.55106 -24.01588 -23.00093 -22.34158 -18.57804 -17.47544 -16.89698 -15.66211 -15.35985 -14.84651 -14.26867 -13.85466 -13.84204 -13.14178 -12.71544 -12.21433 -12.03775 -11.79849 -11.53498 -10.87589 -10.84043 -10.72875 -10.27101 -9.97586 -9.86211 -9.67772 -9.40790 -9.26620 -9.00196 -8.69406 -6.95960 -5.76979 -3.05703 3.41765 3.47531 3.48904 3.64638 3.69490 4.44286 4.58205 5.11670 5.36929 5.45226 5.49147 5.65356 5.72518 5.76172 5.85866 6.07432 6.18314 6.25830 6.32182 6.44687 6.47924 6.57848 6.63252 6.79776 6.86939 6.94561 7.69492 7.77409 8.40815 8.48395 9.52605 10.08137 10.44144 11.45515 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.013244 C = 0.010750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.872384 B = 2113.731889 C = 2604.125107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.134 4.134 3 C -0.022 4.022 4 C 0.206 3.794 5 N -0.710 5.710 6 C -0.233 4.233 7 H 0.069 0.931 8 C -0.009 4.009 9 N -0.930 5.930 10 Si 0.901 3.099 11 H -0.291 1.291 12 H -0.283 1.283 13 H -0.293 1.293 14 C -0.150 4.150 15 C 0.066 3.934 16 O -0.394 6.394 17 C 0.069 3.931 18 C -0.156 4.156 19 H 0.205 0.795 20 H 0.083 0.917 21 H 0.067 0.933 22 H 0.384 0.616 23 H 0.254 0.746 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.639 7.131 4.823 9.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.134 4.134 3 C -0.061 4.061 4 C 0.114 3.886 5 N -0.351 5.351 6 C -0.364 4.364 7 H 0.087 0.913 8 C -0.205 4.205 9 N -0.578 5.578 10 Si 0.732 3.268 11 H -0.218 1.218 12 H -0.209 1.209 13 H -0.219 1.219 14 C -0.188 4.188 15 C -0.011 4.011 16 O -0.313 6.313 17 C -0.008 4.008 18 C -0.196 4.196 19 H 0.222 0.778 20 H 0.102 0.898 21 H 0.086 0.914 22 H 0.219 0.781 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.793 7.099 4.823 9.383 hybrid contribution -0.570 -1.374 -0.016 1.487 sum 3.224 5.726 4.806 8.141 Atomic orbital electron populations 1.24490 0.95647 1.03377 1.03102 1.22778 0.94122 0.98270 0.98202 1.19348 0.85527 1.01890 0.99316 1.19534 0.91224 0.88976 0.88909 1.42433 1.60091 1.02062 1.30560 1.19077 1.19999 0.82647 1.14699 0.91271 1.24703 0.99163 0.97609 0.99058 1.69653 1.31957 1.32998 1.23182 0.86283 0.77014 0.85982 0.77476 1.21805 1.20856 1.21901 1.22385 1.01377 0.97103 0.97977 1.22501 0.81364 1.00745 0.96502 1.87782 1.21779 1.30958 1.90824 1.22452 0.97990 0.83964 0.96347 1.22550 0.97890 1.01787 0.97377 0.77803 0.89827 0.91428 0.78121 0.93603 0.90957 0.91545 0.90122 0.92390 0.90467 0.91493 0.92707 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.76 19.25 29.55 0.57 -4.19 16 2 C -0.13 -2.68 11.83 -37.12 -0.44 -3.12 16 3 C -0.02 -0.40 4.53 -29.52 -0.13 -0.54 16 4 C 0.21 3.93 0.43 -131.64 -0.06 3.87 16 5 N -0.71 -16.75 3.67 -47.06 -0.17 -16.92 16 6 C -0.23 -6.11 8.71 -15.06 -0.13 -6.24 16 7 H 0.07 1.77 6.75 -52.49 -0.35 1.41 16 8 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 9 N -0.93 -27.53 13.07 55.49 0.73 -26.80 16 10 Si 0.90 22.15 29.55 -169.99 -5.02 17.13 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 14 C -0.15 -2.57 4.73 -26.50 -0.13 -2.70 16 15 C 0.07 1.12 6.67 37.30 0.25 1.37 16 16 O -0.39 -7.14 10.77 -35.23 -0.38 -7.52 16 17 C 0.07 1.23 6.68 37.20 0.25 1.48 16 18 C -0.16 -2.75 4.81 -26.59 -0.13 -2.87 16 19 H 0.20 3.20 7.80 -54.09 -0.42 2.77 16 20 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 21 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.38 9.91 6.75 -40.82 -0.28 9.63 16 23 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.07 1.28 7.50 -51.93 -0.39 0.89 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 1.10 7.10 -51.93 -0.37 0.73 16 28 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 29 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.37 7.08 -51.93 -0.37 1.00 16 LS Contribution 258.85 15.07 3.90 3.90 Total: -1.00 -29.50 258.85 -5.22 -34.72 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.22 Total: 8.78 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -0.04 Total: -13.29 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.55 Total: -43.72 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.38 Total: -7.52 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.50 -5.22 -34.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887124491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.647 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds