Wall clock time and date at job start Sun Mar 29 2020 21:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46826 * 101.59917 * 3 2 1 5 5 N 1.46496 * 109.54277 * 304.89569 * 4 3 2 6 6 C 1.36938 * 120.00182 * 299.90129 * 5 4 3 7 7 H 1.07994 * 120.00433 * 354.12433 * 6 5 4 8 8 C 1.38819 * 119.99659 * 174.12535 * 6 5 4 9 9 N 1.31610 * 120.00182 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99738 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46769 * 270.00177 * 10 8 6 12 12 H 1.48506 * 109.47196 * 29.99539 * 10 8 6 13 13 H 1.48493 * 109.47371 * 149.99748 * 10 8 6 14 14 C 1.53173 * 109.54512 * 65.07675 * 4 3 2 15 15 C 1.53279 * 109.06210 * 176.84833 * 14 4 3 16 16 O 1.42897 * 109.46655 * 302.44518 * 15 14 4 17 17 C 1.42908 * 114.09347 * 61.15368 * 16 15 14 18 18 C 1.53081 * 109.41892 * 298.84385 * 17 16 15 19 19 H 4.44647 * 5.63462 * 180.02562 * 4 1 2 20 20 H 1.08995 * 109.47077 * 341.59905 * 3 2 1 21 21 H 1.09001 * 109.46707 * 221.59407 * 3 2 1 22 22 H 0.97002 * 119.99862 * 119.89830 * 5 4 3 23 23 H 0.97001 * 120.00379 * 180.02562 * 9 8 6 24 24 H 1.09001 * 109.52609 * 296.84254 * 14 4 3 25 25 H 1.09002 * 109.52384 * 57.03001 * 14 4 3 26 26 H 1.08999 * 109.45774 * 182.44676 * 15 14 4 27 27 H 1.09006 * 109.46896 * 62.45290 * 15 14 4 28 28 H 1.09010 * 109.47609 * 178.85846 * 17 16 15 29 29 H 1.08996 * 109.48832 * 58.83694 * 17 16 15 30 30 H 1.08994 * 109.52575 * 297.70760 * 18 17 16 31 31 H 1.09000 * 109.57526 * 177.54213 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1558 0.2909 -1.4131 5 7 2.5749 -0.6727 -2.3512 6 6 2.8064 -2.0124 -2.1876 7 1 3.4925 -2.3529 -1.4263 8 6 2.1593 -2.9329 -3.0006 9 7 1.3228 -2.5181 -3.9282 10 14 2.4745 -4.7605 -2.7771 11 1 3.6127 -5.1751 -3.6361 12 1 2.8017 -5.0361 -1.3550 13 1 1.2600 -5.5231 -3.1623 14 6 2.7525 1.7110 -1.8217 15 6 3.3354 2.0183 -3.2056 16 8 4.7554 1.8629 -3.1694 17 6 5.1896 0.5423 -2.8378 18 6 4.6831 0.1759 -1.4405 19 1 -1.0501 0.0002 0.0001 20 1 3.0098 -0.9743 0.3244 21 1 3.0089 0.7694 0.6822 22 1 2.0262 -0.3618 -3.0882 23 1 0.8703 -3.1612 -4.4961 24 1 1.6655 1.7850 -1.8573 25 1 3.1434 2.4239 -1.0957 26 1 3.0889 3.0428 -3.4841 27 1 2.9131 1.3308 -3.9386 28 1 6.2789 0.5037 -2.8514 29 1 4.7917 -0.1647 -3.5657 30 1 5.1129 0.8578 -0.7068 31 1 4.9756 -0.8468 -1.2025 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887124491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:44 Heat of formation + Delta-G solvation = -5.833052 kcal Electronic energy + Delta-G solvation = -14354.338692 eV Core-core repulsion = 12022.677121 eV Total energy + Delta-G solvation = -2331.661571 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.66477 -37.29715 -34.70943 -33.34218 -31.93736 -30.91674 -29.01025 -25.94257 -24.44102 -23.84800 -20.13898 -19.21850 -18.58092 -17.15850 -16.78250 -16.51152 -15.92236 -15.52123 -15.45403 -14.80381 -14.21843 -13.69209 -13.67481 -13.34090 -12.96449 -12.83156 -12.69199 -12.21855 -12.08108 -11.75561 -11.46826 -11.28017 -10.99468 -10.83857 -10.71617 -10.25951 -8.91411 -7.87735 -5.13646 1.46567 1.47142 1.54306 2.11869 2.17985 2.58694 3.07022 3.45671 3.72193 3.84303 4.03086 4.16814 4.23556 4.29352 4.47283 4.68216 4.82766 4.86794 4.91179 4.96271 5.07001 5.13879 5.22150 5.32563 5.38194 5.47183 5.62961 6.33804 6.36112 6.98419 7.40958 8.15784 8.39835 9.36096 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.026791 B = 0.013244 C = 0.010750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.872384 B = 2113.731889 C = 2604.125107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.166 4.166 3 C -0.020 4.020 4 C 0.196 3.804 5 N -0.717 5.717 6 C -0.212 4.212 7 H 0.076 0.924 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.957 3.043 11 H -0.290 1.290 12 H -0.272 1.272 13 H -0.304 1.304 14 C -0.143 4.143 15 C 0.066 3.934 16 O -0.396 6.396 17 C 0.070 3.930 18 C -0.150 4.150 19 H 0.230 0.770 20 H 0.072 0.928 21 H 0.103 0.897 22 H 0.370 0.630 23 H 0.245 0.755 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.029 0.971 28 H 0.104 0.896 29 H 0.031 0.969 30 H 0.086 0.914 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 8.165 6.303 11.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.166 4.166 3 C -0.059 4.059 4 C 0.105 3.895 5 N -0.357 5.357 6 C -0.344 4.344 7 H 0.094 0.906 8 C -0.267 4.267 9 N -0.621 5.621 10 Si 0.788 3.212 11 H -0.218 1.218 12 H -0.197 1.197 13 H -0.231 1.231 14 C -0.181 4.181 15 C -0.011 4.011 16 O -0.315 6.315 17 C -0.006 4.006 18 C -0.190 4.190 19 H 0.246 0.754 20 H 0.091 0.909 21 H 0.121 0.879 22 H 0.202 0.798 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.048 0.952 28 H 0.122 0.878 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.859 8.154 6.352 11.422 hybrid contribution -0.866 -1.593 -0.427 1.863 sum 3.993 6.561 5.925 9.700 Atomic orbital electron populations 1.25302 0.96751 1.02607 1.02317 1.23365 0.95174 0.99076 0.98997 1.19376 0.84811 1.02503 0.99173 1.19867 0.92019 0.89125 0.88445 1.42568 1.59961 1.02016 1.31115 1.19396 1.18050 0.83907 1.13052 0.90597 1.25365 1.00291 1.01114 0.99890 1.69804 1.33998 1.33527 1.24753 0.85371 0.76174 0.81959 0.77714 1.21758 1.19703 1.23101 1.22332 1.00927 0.96273 0.98523 1.22563 0.80860 1.01749 0.95936 1.87787 1.22151 1.30710 1.90831 1.22444 0.99412 0.83232 0.95519 1.22492 0.96456 1.02095 0.97946 0.75371 0.90938 0.87877 0.79803 0.94567 0.91848 0.88790 0.87161 0.95221 0.87823 0.95091 0.89562 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.31 19.25 74.32 1.43 -7.88 16 2 C -0.17 -6.41 11.83 31.13 0.37 -6.04 16 3 C -0.02 -0.70 4.53 28.79 0.13 -0.57 16 4 C 0.20 7.12 0.43 3.72 0.00 7.13 16 5 N -0.72 -33.74 3.67 -302.81 -1.11 -34.86 16 6 C -0.21 -11.08 8.71 84.04 0.73 -10.35 16 7 H 0.08 3.81 6.75 -2.91 -0.02 3.79 16 8 C -0.07 -4.21 5.50 84.87 0.47 -3.74 16 9 N -0.97 -58.84 13.07 21.65 0.28 -58.55 16 10 Si 0.96 46.05 29.55 68.60 2.03 48.07 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 14 C -0.14 -4.55 4.73 30.75 0.15 -4.40 16 15 C 0.07 2.13 6.67 72.08 0.48 2.61 16 16 O -0.40 -13.42 10.77 -148.98 -1.60 -15.03 16 17 C 0.07 2.39 6.68 72.01 0.48 2.87 16 18 C -0.15 -4.90 4.81 30.68 0.15 -4.75 16 19 H 0.23 6.76 7.80 -4.41 -0.03 6.73 16 20 H 0.07 2.65 7.58 -2.39 -0.02 2.64 16 21 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 22 H 0.37 19.45 6.75 -92.71 -0.63 18.82 16 23 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 24 H 0.06 2.15 7.50 -2.39 -0.02 2.13 16 25 H 0.09 2.50 8.14 -2.39 -0.02 2.49 16 26 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.03 1.13 7.10 -2.38 -0.02 1.11 16 28 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 29 H 0.03 1.27 7.75 -2.39 -0.02 1.25 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 2.26 7.08 -2.39 -0.02 2.25 16 Total: -1.00 -63.05 258.85 4.46 -58.59 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.49 Total: 26.90 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 4.38 Total: -25.13 kcal Atomic # 7 Polarization: -92.58 SS G_CDS: -0.83 Total: -93.41 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -1.60 Total: -15.03 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -63.05 4.46 -58.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887124491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.757 kcal (2) G-P(sol) polarization free energy of solvation -63.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds