Wall clock time and date at job start Sun Mar 29 2020 21:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86795 * 120.00258 * 2 1 4 4 H 1.48493 * 109.47164 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46954 * 120.00096 * 3 2 1 6 6 H 1.48501 * 109.47198 * 239.99783 * 3 2 1 7 7 C 1.40052 * 119.99290 * 180.27751 * 2 1 3 8 8 H 1.07997 * 120.00544 * 4.54571 * 7 2 1 9 9 C 1.46377 * 119.99665 * 184.55013 * 7 2 1 10 10 O 1.21687 * 120.00324 * 6.24488 * 9 7 2 11 11 N 1.34782 * 119.99839 * 186.23756 * 9 7 2 12 12 C 1.46497 * 119.99760 * 180.02562 * 11 9 7 13 13 H 1.08998 * 113.54593 * 20.72921 * 12 11 9 14 14 C 1.56730 * 114.57761 * 246.39494 * 12 11 9 15 15 C 1.49484 * 80.92004 * 201.58354 * 14 12 11 16 16 H 1.08997 * 112.68305 * 293.42824 * 15 14 12 17 17 C 1.50673 * 131.21979 * 137.02014 * 15 14 12 18 18 C 1.55764 * 104.16331 * 235.12064 * 17 15 14 19 19 C 1.56234 * 104.82004 * 8.82985 * 18 17 15 20 20 C 1.49808 * 114.57715 * 155.00641 * 12 11 9 21 21 H 1.08997 * 113.84306 * 43.95623 * 20 12 11 22 22 H 0.96998 * 120.00041 * 174.90280 * 1 2 3 23 23 H 0.96997 * 120.00015 * 0.02562 * 11 9 7 24 24 H 1.09005 * 114.61844 * 314.59163 * 14 12 11 25 25 H 1.08997 * 114.62379 * 88.57503 * 14 12 11 26 26 H 1.08999 * 110.49542 * 353.79178 * 17 15 14 27 27 H 1.09000 * 110.49219 * 116.44971 * 17 15 14 28 28 H 1.08998 * 110.36772 * 127.66612 * 18 17 15 29 29 H 1.08996 * 110.36492 * 249.88308 * 18 17 15 30 30 H 1.08996 * 111.02451 * 268.27052 * 19 18 17 31 31 H 1.08996 * 111.01946 * 144.37028 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 1.2759 2.7464 -0.0006 5 1 3.0945 1.6962 1.2125 6 1 3.0946 1.6963 -1.2125 7 6 2.0069 -1.2130 -0.0059 8 1 1.4694 -2.1464 -0.0845 9 6 3.4672 -1.2155 0.0947 10 8 4.0650 -0.1752 0.2973 11 7 4.1497 -2.3703 -0.0371 12 6 5.6111 -2.3729 0.0641 13 1 6.0131 -1.5043 0.5856 14 6 6.3560 -2.7383 -1.2656 15 6 7.4407 -3.0647 -0.2902 16 1 7.8222 -2.1830 0.2248 17 6 8.3925 -4.2305 -0.2171 18 6 8.1744 -4.8115 1.2116 19 6 6.9281 -4.0503 1.7666 20 6 6.2041 -3.6824 0.4861 21 1 5.7667 -4.5459 -0.0149 22 1 -0.4850 -0.8367 -0.0746 23 1 3.6732 -3.1995 -0.1989 24 1 5.9461 -3.5992 -1.7938 25 1 6.5694 -1.8891 -1.9147 26 1 8.1435 -4.9745 -0.9737 27 1 9.4213 -3.8913 -0.3381 28 1 7.9732 -5.8815 1.1593 29 1 9.0470 -4.6203 1.8361 30 1 7.2277 -3.1582 2.3166 31 1 6.3157 -4.7036 2.3881 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889601964.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:08 Heat of formation + Delta-G solvation = 0.781515 kcal Electronic energy + Delta-G solvation = -13781.733845 eV Core-core repulsion = 11450.359104 eV Total energy + Delta-G solvation = -2331.374742 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.07333 -37.47448 -34.02627 -32.82863 -31.48428 -28.54473 -26.24885 -23.96050 -22.58571 -20.63630 -19.91025 -19.05369 -17.91071 -15.66312 -15.16395 -14.79914 -14.31165 -14.18968 -13.60754 -13.33322 -13.02843 -12.23648 -12.13434 -11.88778 -11.77264 -11.13631 -11.08999 -10.76256 -10.67595 -10.34025 -10.29337 -10.15997 -9.21470 -9.02022 -8.94250 -7.89603 -7.81577 -6.95639 -4.90079 3.60708 3.71149 3.84198 4.10521 4.33268 4.51077 4.68173 4.86873 4.91106 4.95574 5.06477 5.23706 5.31886 5.53879 5.61554 5.74020 5.80657 5.88396 5.93948 6.00672 6.09838 6.18396 6.24601 6.40921 6.49740 6.63199 7.54264 7.73621 7.79407 8.14151 8.86677 9.12078 10.09990 10.35950 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064492 B = 0.007570 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.056253 B = 3698.150990 C = 3827.464628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.060 3.940 3 Si 1.132 2.868 4 H -0.323 1.323 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.599 4.599 8 H 0.069 0.931 9 C 0.552 3.448 10 O -0.620 6.620 11 N -0.744 5.744 12 C 0.160 3.840 13 H 0.118 0.882 14 C -0.130 4.130 15 C -0.154 4.154 16 H 0.093 0.907 17 C -0.099 4.099 18 C -0.122 4.122 19 C -0.106 4.106 20 C -0.157 4.157 21 H 0.093 0.907 22 H 0.277 0.723 23 H 0.387 0.613 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.153 -9.116 -0.011 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.158 4.158 3 Si 0.965 3.035 4 H -0.255 1.255 5 H -0.209 1.209 6 H -0.219 1.219 7 C -0.636 4.636 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.514 6.514 11 N -0.392 5.392 12 C 0.053 3.947 13 H 0.135 0.865 14 C -0.170 4.170 15 C -0.173 4.173 16 H 0.111 0.889 17 C -0.136 4.136 18 C -0.159 4.159 19 C -0.144 4.144 20 C -0.176 4.176 21 H 0.112 0.888 22 H 0.087 0.913 23 H 0.219 0.781 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.307 -6.884 0.216 14.983 hybrid contribution -0.095 -2.540 -0.173 2.547 sum 13.212 -9.424 0.043 16.229 Atomic orbital electron populations 1.70656 1.07625 1.31942 1.35985 1.27171 0.95329 1.05039 0.88217 0.82355 0.71358 0.70712 0.79109 1.25500 1.20852 1.21880 1.22073 0.90103 0.96299 1.55099 0.91270 1.18471 0.88687 0.81540 0.75289 1.90126 1.70725 1.31373 1.59139 1.45778 1.04765 1.10743 1.77916 1.22235 0.82054 0.95809 0.94554 0.86450 1.23141 0.95905 1.01206 0.96698 1.22931 0.94016 0.98712 1.01630 0.88923 1.21436 0.98627 0.96805 0.96768 1.23003 0.97723 0.99476 0.95736 1.21878 0.95793 1.00072 0.96642 1.24008 0.98303 0.98074 0.97218 0.88844 0.91269 0.78074 0.89758 0.91648 0.91929 0.92204 0.91909 0.91902 0.91382 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.49 13.65 55.55 0.76 -23.73 16 2 C 0.06 1.75 5.52 -17.36 -0.10 1.66 16 3 Si 1.13 30.45 25.99 -169.99 -4.42 26.03 16 4 H -0.32 -8.34 7.11 56.52 0.40 -7.94 16 5 H -0.28 -7.79 6.79 56.52 0.38 -7.40 16 6 H -0.29 -7.86 7.11 56.52 0.40 -7.46 16 7 C -0.60 -17.24 9.96 -35.63 -0.35 -17.59 16 8 H 0.07 1.96 8.05 -52.49 -0.42 1.53 16 9 C 0.55 14.91 7.57 -12.98 -0.10 14.81 16 10 O -0.62 -18.08 11.66 5.20 0.06 -18.02 16 11 N -0.74 -16.02 5.41 -69.69 -0.38 -16.40 16 12 C 0.16 2.90 4.17 -82.05 -0.34 2.56 16 13 H 0.12 2.35 6.83 -51.93 -0.35 2.00 16 14 C -0.13 -1.98 7.95 -39.54 -0.31 -2.29 16 15 C -0.15 -2.04 4.16 -105.01 -0.44 -2.47 16 16 H 0.09 1.27 7.41 -51.93 -0.38 0.89 16 17 C -0.10 -1.07 6.64 -26.42 -0.18 -1.25 16 18 C -0.12 -1.26 6.99 -23.52 -0.16 -1.43 16 19 C -0.11 -1.33 6.66 -25.69 -0.17 -1.50 16 20 C -0.16 -2.23 3.99 -102.92 -0.41 -2.64 16 21 H 0.09 1.27 7.60 -51.93 -0.39 0.88 16 22 H 0.28 7.79 8.72 -40.82 -0.36 7.43 16 23 H 0.39 7.50 8.74 -40.82 -0.36 7.15 16 24 H 0.08 1.19 7.63 -51.93 -0.40 0.79 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 253.28 15.07 3.82 3.82 Total: -1.00 -31.30 253.28 -7.16 -38.46 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.44 Total: -0.01 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.56 Total: -10.15 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.38 Total: -40.13 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.06 Total: -18.02 kcal Atomic # 14 Polarization: 30.45 SS G_CDS: -4.42 Total: 26.03 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.30 -7.16 -38.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889601964.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.243 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds