Wall clock time and date at job start Sun Mar 29 2020 21:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86795 * 120.00258 * 2 1 4 4 H 1.48493 * 109.47164 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46954 * 120.00096 * 3 2 1 6 6 H 1.48501 * 109.47198 * 239.99783 * 3 2 1 7 7 C 1.40052 * 119.99290 * 180.27751 * 2 1 3 8 8 H 1.07997 * 120.00544 * 4.54571 * 7 2 1 9 9 C 1.46377 * 119.99665 * 184.55013 * 7 2 1 10 10 O 1.21687 * 120.00324 * 6.24488 * 9 7 2 11 11 N 1.34782 * 119.99839 * 186.23756 * 9 7 2 12 12 C 1.46497 * 119.99760 * 180.02562 * 11 9 7 13 13 H 1.08998 * 113.54593 * 20.72921 * 12 11 9 14 14 C 1.56730 * 114.57761 * 246.39494 * 12 11 9 15 15 C 1.49484 * 80.92004 * 201.58354 * 14 12 11 16 16 H 1.08997 * 112.68305 * 293.42824 * 15 14 12 17 17 C 1.50673 * 131.21979 * 137.02014 * 15 14 12 18 18 C 1.55764 * 104.16331 * 235.12064 * 17 15 14 19 19 C 1.56234 * 104.82004 * 8.82985 * 18 17 15 20 20 C 1.49808 * 114.57715 * 155.00641 * 12 11 9 21 21 H 1.08997 * 113.84306 * 43.95623 * 20 12 11 22 22 H 0.96998 * 120.00041 * 174.90280 * 1 2 3 23 23 H 0.96997 * 120.00015 * 0.02562 * 11 9 7 24 24 H 1.09005 * 114.61844 * 314.59163 * 14 12 11 25 25 H 1.08997 * 114.62379 * 88.57503 * 14 12 11 26 26 H 1.08999 * 110.49542 * 353.79178 * 17 15 14 27 27 H 1.09000 * 110.49219 * 116.44971 * 17 15 14 28 28 H 1.08998 * 110.36772 * 127.66612 * 18 17 15 29 29 H 1.08996 * 110.36492 * 249.88308 * 18 17 15 30 30 H 1.08996 * 111.02451 * 268.27052 * 19 18 17 31 31 H 1.08996 * 111.01946 * 144.37028 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 1.2759 2.7464 -0.0006 5 1 3.0945 1.6962 1.2125 6 1 3.0946 1.6963 -1.2125 7 6 2.0069 -1.2130 -0.0059 8 1 1.4694 -2.1464 -0.0845 9 6 3.4672 -1.2155 0.0947 10 8 4.0650 -0.1752 0.2973 11 7 4.1497 -2.3703 -0.0371 12 6 5.6111 -2.3729 0.0641 13 1 6.0131 -1.5043 0.5856 14 6 6.3560 -2.7383 -1.2656 15 6 7.4407 -3.0647 -0.2902 16 1 7.8222 -2.1830 0.2248 17 6 8.3925 -4.2305 -0.2171 18 6 8.1744 -4.8115 1.2116 19 6 6.9281 -4.0503 1.7666 20 6 6.2041 -3.6824 0.4861 21 1 5.7667 -4.5459 -0.0149 22 1 -0.4850 -0.8367 -0.0746 23 1 3.6732 -3.1995 -0.1989 24 1 5.9461 -3.5992 -1.7938 25 1 6.5694 -1.8891 -1.9147 26 1 8.1435 -4.9745 -0.9737 27 1 9.4213 -3.8913 -0.3381 28 1 7.9732 -5.8815 1.1593 29 1 9.0470 -4.6203 1.8361 30 1 7.2277 -3.1582 2.3166 31 1 6.3157 -4.7036 2.3881 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889601964.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:08 Heat of formation + Delta-G solvation = -20.385591 kcal Electronic energy + Delta-G solvation = -13782.651720 eV Core-core repulsion = 11450.359104 eV Total energy + Delta-G solvation = -2332.292616 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.27870 -39.50456 -35.46753 -35.02279 -33.05015 -29.60195 -28.31892 -25.01482 -24.06930 -21.98548 -21.53129 -20.31170 -20.00773 -17.43475 -16.94945 -15.92205 -15.73738 -15.45331 -15.28015 -15.11796 -14.90570 -14.23430 -13.63922 -13.27845 -12.95355 -12.60219 -12.41880 -12.17255 -11.97833 -11.89041 -11.75923 -11.36344 -11.23583 -11.19614 -10.29286 -10.01217 -9.57942 -9.19344 -7.15206 1.42362 1.53480 1.96097 2.19144 2.40544 2.73121 3.01541 3.23526 3.66793 3.75823 3.93290 4.02800 4.20725 4.40605 4.53841 4.66050 4.78725 4.84267 4.92307 4.94659 5.04931 5.15687 5.20258 5.30433 5.44490 5.49603 5.54199 5.56588 5.87981 6.06713 6.62822 7.18112 8.00407 8.10216 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064492 B = 0.007570 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.056253 B = 3698.150990 C = 3827.464628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.028 3.972 3 Si 1.164 2.836 4 H -0.306 1.306 5 H -0.297 1.297 6 H -0.295 1.295 7 C -0.619 4.619 8 H 0.066 0.934 9 C 0.549 3.451 10 O -0.645 6.645 11 N -0.732 5.732 12 C 0.133 3.867 13 H 0.091 0.909 14 C -0.120 4.120 15 C -0.141 4.141 16 H 0.082 0.918 17 C -0.094 4.094 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.153 4.153 21 H 0.108 0.892 22 H 0.277 0.723 23 H 0.398 0.602 24 H 0.102 0.898 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.807 -10.671 -0.284 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.186 4.186 3 Si 0.995 3.005 4 H -0.236 1.236 5 H -0.225 1.225 6 H -0.223 1.223 7 C -0.655 4.655 8 H 0.084 0.916 9 C 0.355 3.645 10 O -0.540 6.540 11 N -0.379 5.379 12 C 0.027 3.973 13 H 0.109 0.891 14 C -0.159 4.159 15 C -0.160 4.160 16 H 0.101 0.899 17 C -0.132 4.132 18 C -0.150 4.150 19 C -0.148 4.148 20 C -0.173 4.173 21 H 0.126 0.874 22 H 0.088 0.912 23 H 0.232 0.768 24 H 0.120 0.880 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.969 -8.480 -0.067 17.204 hybrid contribution -0.569 -2.116 -0.067 2.192 sum 14.400 -10.595 -0.134 17.878 Atomic orbital electron populations 1.70660 1.07776 1.32113 1.37127 1.27823 0.95729 1.06832 0.88235 0.81923 0.70660 0.69862 0.78055 1.23636 1.22510 1.22320 1.22269 0.91419 0.96152 1.55704 0.91598 1.18374 0.88463 0.82654 0.75041 1.90104 1.71155 1.32708 1.60059 1.45597 1.06478 1.09545 1.76331 1.22593 0.79701 0.97342 0.97616 0.89082 1.23092 0.96013 1.01402 0.95390 1.22829 0.94113 0.99269 0.99768 0.89942 1.21457 0.98583 0.95687 0.97430 1.22962 0.96847 0.99915 0.95291 1.21948 0.96803 1.00153 0.95918 1.23925 0.97919 0.96335 0.99071 0.87388 0.91204 0.76767 0.87961 0.92724 0.90729 0.90831 0.90348 0.90595 0.92390 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.83 13.65 21.84 0.30 -49.53 16 2 C 0.03 1.65 5.52 85.31 0.47 2.12 16 3 Si 1.16 62.17 25.99 68.60 1.78 63.95 16 4 H -0.31 -15.27 7.11 99.48 0.71 -14.56 16 5 H -0.30 -16.51 6.79 99.48 0.68 -15.83 16 6 H -0.30 -15.82 7.11 99.48 0.71 -15.12 16 7 C -0.62 -35.81 9.96 24.83 0.25 -35.56 16 8 H 0.07 3.76 8.05 -2.91 -0.02 3.73 16 9 C 0.55 29.79 7.57 86.36 0.65 30.45 16 10 O -0.64 -37.99 11.66 -4.31 -0.05 -38.04 16 11 N -0.73 -31.18 5.41 -492.62 -2.67 -33.85 16 12 C 0.13 4.71 4.17 35.85 0.15 4.86 16 13 H 0.09 3.72 6.83 -2.39 -0.02 3.70 16 14 C -0.12 -3.43 7.95 22.30 0.18 -3.26 16 15 C -0.14 -3.40 4.16 -20.11 -0.08 -3.48 16 16 H 0.08 2.17 7.41 -2.39 -0.02 2.15 16 17 C -0.09 -1.67 6.64 30.79 0.20 -1.47 16 18 C -0.11 -1.90 6.99 32.67 0.23 -1.67 16 19 C -0.11 -2.51 6.66 31.27 0.21 -2.30 16 20 C -0.15 -4.03 3.99 -18.76 -0.07 -4.10 16 21 H 0.11 2.58 7.60 -2.39 -0.02 2.56 16 22 H 0.28 15.70 8.72 -92.71 -0.81 14.89 16 23 H 0.40 15.03 8.74 -92.71 -0.81 14.22 16 24 H 0.10 2.57 7.63 -2.38 -0.02 2.55 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -66.38 253.28 1.79 -64.60 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.24 Total: 7.28 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 2.18 Total: -14.42 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -2.37 Total: -83.38 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -0.05 Total: -38.04 kcal Atomic # 14 Polarization: 62.17 SS G_CDS: 1.78 Total: 63.95 kcal Total: -66.38 1.79 -64.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889601964.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.214 kcal (2) G-P(sol) polarization free energy of solvation -66.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds