Wall clock time and date at job start Sun Mar 29 2020 21:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86796 * 120.00018 * 2 1 4 4 H 1.48502 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47254 * 300.00275 * 3 2 1 6 6 H 1.48500 * 109.47155 * 60.00363 * 3 2 1 7 7 C 1.40055 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00070 * 359.97438 * 7 2 1 10 10 O 1.21686 * 119.99981 * 0.02562 * 9 7 2 11 11 N 1.34772 * 120.00025 * 180.02562 * 9 7 2 12 12 C 1.46498 * 119.99954 * 180.27865 * 11 9 7 13 13 H 1.09002 * 113.54643 * 52.30224 * 12 11 9 14 14 C 1.56728 * 114.57261 * 278.03049 * 12 11 9 15 15 C 1.49493 * 80.91239 * 292.25889 * 14 12 11 16 16 H 1.09003 * 113.11061 * 66.56835 * 15 14 12 17 17 C 1.50679 * 131.21279 * 222.97261 * 15 14 12 18 18 C 1.56117 * 104.10357 * 124.84164 * 17 15 14 19 19 C 1.56229 * 104.82532 * 351.18982 * 18 17 15 20 20 C 1.49805 * 114.57291 * 186.57514 * 12 11 9 21 21 H 1.09004 * 113.84214 * 182.18653 * 20 12 11 22 22 H 0.96999 * 119.99588 * 359.97438 * 1 2 3 23 23 H 0.96996 * 120.00050 * 359.97438 * 11 9 7 24 24 H 1.08999 * 114.62349 * 45.26274 * 14 12 11 25 25 H 1.08996 * 114.62017 * 179.21005 * 14 12 11 26 26 H 1.09001 * 110.49509 * 243.55409 * 17 15 14 27 27 H 1.08999 * 110.49297 * 6.21409 * 17 15 14 28 28 H 1.08998 * 110.38117 * 232.34321 * 18 17 15 29 29 H 1.09003 * 110.44555 * 110.07234 * 18 17 15 30 30 H 1.08995 * 111.02402 * 215.61015 * 19 18 17 31 31 H 1.09006 * 111.05740 * 91.72802 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2124 6 1 1.8821 2.3964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2751 -2.4806 -0.0005 10 8 0.0583 -2.4806 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 1.2165 -4.9164 -0.0067 13 1 0.4729 -4.9861 -0.8007 14 6 0.7122 -5.3847 1.4014 15 6 2.1840 -5.5350 1.6157 16 1 2.7166 -4.5839 1.6093 17 6 2.9847 -6.6273 2.2762 18 6 4.0153 -7.0565 1.1849 19 6 3.5594 -6.3115 -0.1105 20 6 2.0764 -6.1330 0.1500 21 1 1.5240 -7.0717 0.1060 22 1 -0.4849 0.8401 0.0004 23 1 2.9189 -3.6478 -0.0009 24 1 0.2438 -4.6028 1.9992 25 1 0.1554 -6.3217 1.3958 26 1 3.4982 -6.2442 3.1580 27 1 2.3402 -7.4650 2.5426 28 1 3.9812 -8.1354 1.0340 29 1 5.0210 -6.7454 1.4676 30 1 3.7301 -6.9251 -0.9950 31 1 4.0588 -5.3471 -0.2040 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889601965.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:10 Heat of formation + Delta-G solvation = 30.094077 kcal Electronic energy + Delta-G solvation = -13979.191329 eV Core-core repulsion = 11649.087675 eV Total energy + Delta-G solvation = -2330.103654 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.09565 -36.71197 -33.66517 -32.40505 -30.91929 -28.40236 -26.22299 -23.91165 -22.74855 -20.81190 -19.42294 -18.36885 -17.26051 -15.36326 -14.97888 -14.49527 -14.45386 -13.92690 -13.73324 -13.23684 -12.54167 -12.34028 -11.77694 -11.52867 -11.21842 -11.04293 -10.94643 -10.69052 -10.48255 -10.26414 -10.16478 -10.15614 -10.05585 -8.87701 -8.66729 -7.59221 -7.41503 -6.17960 -4.63562 3.13440 3.21576 3.25975 4.07951 4.10578 4.57549 4.73716 5.00833 5.10858 5.18598 5.21212 5.48796 5.66184 5.71389 5.85104 5.92631 5.97483 6.07026 6.12309 6.21462 6.29366 6.42787 6.60382 6.69895 6.83456 6.87740 7.44053 7.91243 8.11847 8.33620 9.03199 9.53679 10.61123 10.79968 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051909 B = 0.008122 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.276030 B = 3446.802635 C = 3694.683861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.575 6.575 11 N -0.745 5.745 12 C 0.172 3.828 13 H 0.072 0.928 14 C -0.131 4.131 15 C -0.153 4.153 16 H 0.107 0.893 17 C -0.104 4.104 18 C -0.120 4.120 19 C -0.104 4.104 20 C -0.165 4.165 21 H 0.097 0.903 22 H 0.268 0.732 23 H 0.382 0.618 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.990 -10.092 1.856 12.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.457 6.457 11 N -0.401 5.401 12 C 0.064 3.936 13 H 0.090 0.910 14 C -0.170 4.170 15 C -0.171 4.171 16 H 0.125 0.875 17 C -0.142 4.142 18 C -0.158 4.158 19 C -0.141 4.141 20 C -0.183 4.183 21 H 0.115 0.885 22 H 0.078 0.922 23 H 0.215 0.785 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.933 -9.978 1.848 11.755 hybrid contribution 0.957 0.699 0.070 1.188 sum 6.890 -9.279 1.918 11.715 Atomic orbital electron populations 1.70034 1.07034 1.27135 1.35417 1.25702 0.94612 1.00266 0.92630 0.86327 0.80481 0.81802 0.78208 1.18803 1.20159 1.20171 1.20909 0.93572 0.89381 1.54416 0.91462 1.18228 0.87281 0.82232 0.76313 1.90603 1.14009 1.86705 1.54417 1.46041 1.08178 1.04027 1.81881 1.20765 0.93512 0.83675 0.95606 0.90981 1.22990 0.93685 1.00744 0.99606 1.23429 0.97386 0.99609 0.96724 0.87522 1.21591 0.97219 0.97971 0.97397 1.23036 0.98629 0.99532 0.94615 1.21799 0.95279 1.00316 0.96739 1.23747 0.95828 0.97932 1.00811 0.88451 0.92169 0.78457 0.91278 0.89997 0.92434 0.92302 0.92107 0.92002 0.92323 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.15 11.83 55.55 0.66 -22.50 16 2 C 0.09 2.46 5.50 -17.36 -0.10 2.36 16 3 Si 0.91 20.24 29.56 -169.99 -5.02 15.21 16 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.55 -15.48 9.54 -35.63 -0.34 -15.82 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.56 15.84 7.75 -12.99 -0.10 15.74 16 10 O -0.58 -18.68 15.02 5.20 0.08 -18.60 16 11 N -0.74 -16.76 4.10 -69.72 -0.29 -17.05 16 12 C 0.17 3.38 4.34 -82.07 -0.36 3.03 16 13 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 14 C -0.13 -2.38 8.01 -39.31 -0.31 -2.69 16 15 C -0.15 -2.48 4.08 -104.94 -0.43 -2.90 16 16 H 0.11 1.95 5.82 -51.93 -0.30 1.65 16 17 C -0.10 -1.36 6.66 -26.22 -0.17 -1.54 16 18 C -0.12 -1.41 7.00 -23.33 -0.16 -1.57 16 19 C -0.10 -1.37 6.55 -25.69 -0.17 -1.54 16 20 C -0.16 -2.50 4.12 -102.62 -0.42 -2.92 16 21 H 0.10 1.35 7.60 -51.93 -0.39 0.95 16 22 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 23 H 0.38 7.66 6.63 -40.82 -0.27 7.39 16 24 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.08 1.26 7.63 -51.93 -0.40 0.87 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.94 6.97 -51.93 -0.36 0.58 16 LS Contribution 253.17 15.07 3.82 3.82 Total: -1.00 -32.76 253.17 -7.56 -40.31 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.23 Total: 6.66 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.56 Total: -7.85 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.37 Total: -39.55 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.08 Total: -18.60 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -32.76 -7.56 -40.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889601965.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.407 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds