Wall clock time and date at job start Sun Mar 29 2020 22:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00440 * 2 1 4 4 H 1.48499 * 109.47152 * 269.99929 * 3 2 1 5 5 H 1.48502 * 109.46975 * 29.99714 * 3 2 1 6 6 H 1.48500 * 109.47405 * 150.00074 * 3 2 1 7 7 C 1.37887 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99976 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46964 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00011 * 180.02562 * 10 9 7 12 12 C 1.53924 * 113.59161 * 204.99885 * 11 10 9 13 13 C 1.53008 * 86.85555 * 220.46909 * 12 11 10 14 14 C 1.53032 * 87.86541 * 25.00374 * 13 12 11 15 15 C 1.53563 * 115.13553 * 268.16763 * 13 12 11 16 16 C 1.55064 * 103.98840 * 206.85589 * 15 13 12 17 17 C 1.54954 * 102.85548 * 37.29719 * 16 15 13 18 18 C 1.53176 * 115.37793 * 142.15415 * 13 12 11 19 19 H 0.96999 * 119.99178 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47242 * 59.99813 * 9 7 2 21 21 H 1.09007 * 109.47200 * 299.99978 * 9 7 2 22 22 H 1.00894 * 111.00172 * 303.95117 * 10 9 7 23 23 H 1.09001 * 112.83433 * 336.12306 * 11 10 9 24 24 H 1.09000 * 113.64809 * 105.98021 * 12 11 10 25 25 H 1.09002 * 113.65028 * 334.96338 * 12 11 10 26 26 H 1.09000 * 113.64682 * 89.48384 * 14 13 12 27 27 H 1.09001 * 113.65461 * 220.50306 * 14 13 12 28 28 H 1.09002 * 110.52283 * 325.48212 * 15 13 12 29 29 H 1.08999 * 110.52863 * 88.22666 * 15 13 12 30 30 H 1.09000 * 110.73703 * 278.95971 * 16 15 13 31 31 H 1.08999 * 110.89117 * 155.70918 * 16 15 13 32 32 H 1.09000 * 110.47714 * 203.76162 * 17 16 15 33 33 H 1.09003 * 110.58863 * 81.19760 * 17 16 15 34 34 H 1.09005 * 110.09308 * 248.87377 * 18 13 12 35 35 H 1.08997 * 110.09347 * 10.46476 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5050 -4.9071 0.0012 12 6 2.3345 -6.0580 0.5984 13 6 1.7804 -6.9305 -0.5298 14 6 1.5808 -5.6504 -1.3444 15 6 0.4922 -7.6945 -0.1910 16 6 0.5391 -8.9376 -1.1167 17 6 2.0447 -9.3040 -1.1259 18 6 2.7677 -7.9391 -1.1251 19 1 -0.4849 0.8401 0.0004 20 1 0.6245 -2.5571 -0.8897 21 1 0.6238 -2.5567 0.8903 22 1 2.8408 -3.5492 -0.7791 23 1 0.4954 -4.8409 0.4067 24 1 2.0048 -6.3653 1.5909 25 1 3.4110 -5.8978 0.5390 26 1 2.4466 -5.3764 -1.9472 27 1 0.6478 -5.6315 -1.9076 28 1 0.4918 -7.9976 0.8561 29 1 -0.3836 -7.0850 -0.4137 30 1 0.1974 -8.6845 -2.1204 31 1 -0.0540 -9.7531 -0.7028 32 1 2.2945 -9.8674 -2.0249 33 1 2.3058 -9.8744 -0.2346 34 1 3.0274 -7.6522 -2.1441 35 1 3.6660 -7.9915 -0.5099 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894083630.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:25 Heat of formation + Delta-G solvation = -3.825974 kcal Electronic energy + Delta-G solvation = -13748.690730 eV Core-core repulsion = 11552.949287 eV Total energy + Delta-G solvation = -2195.741443 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.97755 -35.73126 -33.38228 -31.51636 -28.73106 -26.92663 -25.39561 -25.03662 -21.70839 -21.07353 -19.97200 -18.00682 -16.31075 -15.58848 -15.11455 -14.84593 -14.26164 -13.94927 -13.41988 -13.01689 -12.48387 -12.32676 -11.94736 -11.82273 -11.23562 -11.06774 -11.01414 -10.91649 -10.81472 -10.57914 -10.51338 -10.35925 -10.03980 -9.80071 -9.57220 -9.05264 -8.45838 -7.17480 -6.00631 -4.02464 3.33370 3.39252 3.44198 4.45204 4.58176 4.63400 4.69560 5.16472 5.18885 5.29327 5.35033 5.43606 5.49013 5.61426 5.67518 5.79602 5.87529 5.90310 5.97589 6.09297 6.14245 6.17065 6.26482 6.32113 6.33267 6.45163 6.71531 6.80720 7.31566 7.48355 7.82896 8.17451 8.47050 8.67425 9.07391 9.62413 11.10482 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.080684 B = 0.005572 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.948207 B = 5023.493885 C = 5171.987184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.680 5.680 11 C 0.072 3.928 12 C -0.118 4.118 13 C -0.085 4.085 14 C -0.156 4.156 15 C -0.102 4.102 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.109 4.109 19 H 0.261 0.739 20 H -0.014 1.014 21 H 0.026 0.974 22 H 0.330 0.670 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -16.146 -2.288 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.308 5.308 11 C -0.039 4.039 12 C -0.157 4.157 13 C -0.086 4.086 14 C -0.195 4.195 15 C -0.139 4.139 16 C -0.161 4.161 17 C -0.162 4.162 18 C -0.147 4.147 19 H 0.070 0.930 20 H 0.004 0.996 21 H 0.045 0.955 22 H 0.147 0.853 23 H 0.104 0.896 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.319 -15.972 -1.586 16.217 hybrid contribution 0.017 0.933 -0.952 1.333 sum 2.336 -15.039 -2.537 15.430 Atomic orbital electron populations 1.69969 1.06094 1.26725 1.51034 1.24996 0.94870 0.99356 0.95375 0.86489 0.79816 0.83048 0.78004 1.20747 1.21243 1.19770 1.21220 0.93510 0.90379 1.50185 0.92025 1.19576 0.90669 0.87475 0.95624 1.60582 1.20582 1.01172 1.48494 1.22942 0.97221 0.89702 0.94073 1.23125 1.00343 0.95416 0.96789 1.21815 0.95480 0.93477 0.97786 1.23711 1.01434 0.96333 0.98021 1.22128 0.96661 0.95855 0.99291 1.22511 0.96238 0.97527 0.99856 1.22384 0.95483 0.97200 1.01106 1.22049 0.97924 0.94048 1.00647 0.92954 0.99629 0.95545 0.85293 0.89605 0.92081 0.90090 0.90334 0.92142 0.91449 0.91551 0.91738 0.92007 0.92241 0.91952 0.91956 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.89 9.32 -34.44 -0.32 -15.21 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.20 5.28 -4.98 -0.03 5.17 16 10 N -0.68 -15.01 6.61 -106.98 -0.71 -15.72 16 11 C 0.07 1.32 4.01 -66.76 -0.27 1.05 16 12 C -0.12 -1.80 7.03 -26.25 -0.18 -1.99 16 13 C -0.09 -1.13 1.13 -154.11 -0.17 -1.30 16 14 C -0.16 -2.41 6.76 -26.24 -0.18 -2.59 16 15 C -0.10 -1.23 5.99 -25.35 -0.15 -1.38 16 16 C -0.12 -1.28 6.91 -24.61 -0.17 -1.45 16 17 C -0.12 -1.25 6.84 -24.93 -0.17 -1.42 16 18 C -0.11 -1.26 6.33 -25.87 -0.16 -1.43 16 19 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 20 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 21 H 0.03 0.77 8.13 -51.92 -0.42 0.34 16 22 H 0.33 6.97 8.19 -39.29 -0.32 6.64 16 23 H 0.09 1.65 7.87 -51.93 -0.41 1.25 16 24 H 0.06 0.90 8.03 -51.93 -0.42 0.48 16 25 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 26 H 0.08 1.20 7.79 -51.93 -0.40 0.80 16 27 H 0.06 0.94 8.03 -51.93 -0.42 0.52 16 28 H 0.07 0.78 8.03 -51.93 -0.42 0.37 16 29 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.72 7.91 -51.93 -0.41 0.31 16 35 H 0.06 0.72 7.90 -51.93 -0.41 0.31 16 LS Contribution 280.51 15.07 4.23 4.23 Total: -1.00 -29.81 280.51 -8.79 -38.59 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.12 Total: 1.54 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -1.91 Total: -19.05 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.03 Total: -42.26 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.81 -8.79 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894083630.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.767 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds