Wall clock time and date at job start Sun Mar 29 2020 22:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00440 * 2 1 4 4 H 1.48499 * 109.47152 * 269.99929 * 3 2 1 5 5 H 1.48502 * 109.46975 * 29.99714 * 3 2 1 6 6 H 1.48500 * 109.47405 * 150.00074 * 3 2 1 7 7 C 1.37887 * 119.99506 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99686 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99976 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46964 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00011 * 180.02562 * 10 9 7 12 12 C 1.53924 * 113.59161 * 204.99885 * 11 10 9 13 13 C 1.53008 * 86.85555 * 220.46909 * 12 11 10 14 14 C 1.53032 * 87.86541 * 25.00374 * 13 12 11 15 15 C 1.53563 * 115.13553 * 268.16763 * 13 12 11 16 16 C 1.55064 * 103.98840 * 206.85589 * 15 13 12 17 17 C 1.54954 * 102.85548 * 37.29719 * 16 15 13 18 18 C 1.53176 * 115.37793 * 142.15415 * 13 12 11 19 19 H 0.96999 * 119.99178 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47242 * 59.99813 * 9 7 2 21 21 H 1.09007 * 109.47200 * 299.99978 * 9 7 2 22 22 H 1.00894 * 111.00172 * 303.95117 * 10 9 7 23 23 H 1.09001 * 112.83433 * 336.12306 * 11 10 9 24 24 H 1.09000 * 113.64809 * 105.98021 * 12 11 10 25 25 H 1.09002 * 113.65028 * 334.96338 * 12 11 10 26 26 H 1.09000 * 113.64682 * 89.48384 * 14 13 12 27 27 H 1.09001 * 113.65461 * 220.50306 * 14 13 12 28 28 H 1.09002 * 110.52283 * 325.48212 * 15 13 12 29 29 H 1.08999 * 110.52863 * 88.22666 * 15 13 12 30 30 H 1.09000 * 110.73703 * 278.95971 * 16 15 13 31 31 H 1.08999 * 110.89117 * 155.70918 * 16 15 13 32 32 H 1.09000 * 110.47714 * 203.76162 * 17 16 15 33 33 H 1.09003 * 110.58863 * 81.19760 * 17 16 15 34 34 H 1.09005 * 110.09308 * 248.87377 * 18 13 12 35 35 H 1.08997 * 110.09347 * 10.46476 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5050 -4.9071 0.0012 12 6 2.3345 -6.0580 0.5984 13 6 1.7804 -6.9305 -0.5298 14 6 1.5808 -5.6504 -1.3444 15 6 0.4922 -7.6945 -0.1910 16 6 0.5391 -8.9376 -1.1167 17 6 2.0447 -9.3040 -1.1259 18 6 2.7677 -7.9391 -1.1251 19 1 -0.4849 0.8401 0.0004 20 1 0.6245 -2.5571 -0.8897 21 1 0.6238 -2.5567 0.8903 22 1 2.8408 -3.5492 -0.7791 23 1 0.4954 -4.8409 0.4067 24 1 2.0048 -6.3653 1.5909 25 1 3.4110 -5.8978 0.5390 26 1 2.4466 -5.3764 -1.9472 27 1 0.6478 -5.6315 -1.9076 28 1 0.4918 -7.9976 0.8561 29 1 -0.3836 -7.0850 -0.4137 30 1 0.1974 -8.6845 -2.1204 31 1 -0.0540 -9.7531 -0.7028 32 1 2.2945 -9.8674 -2.0249 33 1 2.3058 -9.8744 -0.2346 34 1 3.0274 -7.6522 -2.1441 35 1 3.6660 -7.9915 -0.5099 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894083630.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:24 Heat of formation + Delta-G solvation = -22.007754 kcal Electronic energy + Delta-G solvation = -13749.479151 eV Core-core repulsion = 11552.949287 eV Total energy + Delta-G solvation = -2196.529864 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.17360 -37.11919 -35.24714 -33.38287 -29.63468 -28.76140 -26.67582 -26.46925 -23.76237 -22.21859 -21.12910 -19.17595 -18.45580 -16.86166 -16.48790 -16.32930 -15.80221 -15.52518 -14.62277 -14.36828 -14.15675 -13.70238 -13.67265 -13.11610 -12.93702 -12.73867 -12.65328 -12.14121 -12.04081 -11.90608 -11.85250 -11.47995 -11.38107 -11.33251 -10.97000 -10.79462 -10.66786 -9.01329 -8.23597 -6.35607 1.40364 1.42547 1.54516 2.39554 3.09277 3.48151 3.56243 3.63800 3.77093 4.08133 4.16418 4.24940 4.39155 4.59044 4.68372 4.69050 4.84051 4.88015 4.93390 4.99682 5.04345 5.09043 5.14269 5.22220 5.24185 5.26523 5.40226 5.48577 5.53011 5.56983 5.65082 6.02186 6.49221 6.73481 6.89960 7.35834 8.88057 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.080684 B = 0.005572 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.948207 B = 5023.493885 C = 5171.987184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.210 3.790 10 N -0.679 5.679 11 C 0.053 3.947 12 C -0.109 4.109 13 C -0.072 4.072 14 C -0.150 4.150 15 C -0.107 4.107 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.109 4.109 19 H 0.265 0.735 20 H -0.041 1.041 21 H -0.005 1.005 22 H 0.335 0.665 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.682 -17.063 -2.587 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.308 5.308 11 C -0.058 4.058 12 C -0.147 4.147 13 C -0.072 4.072 14 C -0.189 4.189 15 C -0.144 4.144 16 C -0.158 4.158 17 C -0.157 4.157 18 C -0.147 4.147 19 H 0.074 0.926 20 H -0.024 1.024 21 H 0.013 0.987 22 H 0.153 0.847 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.619 -16.922 -1.889 17.408 hybrid contribution -0.431 1.189 -0.845 1.521 sum 3.187 -15.733 -2.734 16.284 Atomic orbital electron populations 1.70102 1.07907 1.28048 1.51493 1.25998 0.95807 1.03523 0.94450 0.85289 0.78462 0.77726 0.78548 1.19551 1.20616 1.18839 1.21578 0.93823 0.91522 1.50732 0.91747 1.19195 0.90683 0.89131 0.92790 1.60518 1.19948 1.01466 1.48918 1.23130 0.96838 0.88802 0.96988 1.23063 0.99930 0.93952 0.97775 1.21738 0.96626 0.93035 0.95847 1.23647 1.01405 0.97201 0.96683 1.22178 0.95428 0.96521 1.00278 1.22507 0.97001 0.96948 0.99323 1.22380 0.94645 0.96361 1.02320 1.22050 0.97673 0.94306 1.00635 0.92581 1.02374 0.98667 0.84685 0.91489 0.91534 0.89838 0.89924 0.92611 0.90789 0.92768 0.91881 0.90424 0.90832 0.91003 0.91766 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.83 13.29 21.45 0.28 -57.54 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.98 45.03 29.54 68.60 2.03 47.05 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.54 -31.71 9.32 25.60 0.24 -31.47 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 9 C 0.21 11.77 5.28 85.56 0.45 12.22 16 10 N -0.68 -30.74 6.61 -492.38 -3.25 -33.99 16 11 C 0.05 1.98 4.01 45.53 0.18 2.16 16 12 C -0.11 -3.23 7.03 30.91 0.22 -3.01 16 13 C -0.07 -1.81 1.13 -51.92 -0.06 -1.87 16 14 C -0.15 -4.63 6.76 30.91 0.21 -4.42 16 15 C -0.11 -2.43 5.99 31.49 0.19 -2.24 16 16 C -0.12 -2.19 6.91 31.97 0.22 -1.97 16 17 C -0.12 -2.02 6.84 31.76 0.22 -1.80 16 18 C -0.11 -2.25 6.33 31.15 0.20 -2.05 16 19 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 20 H -0.04 -2.49 8.14 -2.39 -0.02 -2.51 16 21 H 0.00 -0.29 8.13 -2.38 -0.02 -0.31 16 22 H 0.34 14.35 8.19 -89.70 -0.73 13.61 16 23 H 0.07 2.72 7.87 -2.39 -0.02 2.70 16 24 H 0.07 1.89 8.03 -2.39 -0.02 1.87 16 25 H 0.08 2.45 8.11 -2.39 -0.02 2.43 16 26 H 0.08 2.48 7.79 -2.39 -0.02 2.46 16 27 H 0.06 1.75 8.03 -2.39 -0.02 1.73 16 28 H 0.07 1.60 8.03 -2.39 -0.02 1.58 16 29 H 0.05 1.36 7.88 -2.39 -0.02 1.34 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.31 7.91 -2.38 -0.02 1.30 16 35 H 0.07 1.37 7.90 -2.39 -0.02 1.35 16 Total: -1.00 -64.30 280.51 1.89 -62.41 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.31 Total: 16.05 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 2.53 Total: -33.98 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -2.97 Total: -91.54 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -64.30 1.89 -62.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894083630.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.403 kcal (2) G-P(sol) polarization free energy of solvation -64.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds