Wall clock time and date at job start Sun Mar 29 2020 21:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48506 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46905 * 299.99530 * 3 2 1 6 6 H 1.48494 * 109.47159 * 59.99796 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 C 1.52996 * 115.55112 * 180.02562 * 13 11 10 15 15 C 1.52996 * 117.49858 * 34.33201 * 14 13 11 16 16 C 1.52996 * 117.49896 * 325.66739 * 14 13 11 17 17 C 1.53004 * 117.49371 * 34.33028 * 13 11 10 18 18 C 1.52999 * 117.49412 * 325.67715 * 13 11 10 19 19 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 21 21 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 22 22 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 23 23 H 1.08998 * 115.54711 * 179.97438 * 14 13 11 24 24 H 1.08991 * 117.50190 * 359.97438 * 15 14 13 25 25 H 1.08999 * 117.49875 * 145.02289 * 15 14 13 26 26 H 1.09002 * 117.50001 * 214.97870 * 16 14 13 27 27 H 1.08991 * 117.50386 * 359.97438 * 16 14 13 28 28 H 1.09000 * 117.49870 * 0.02562 * 17 13 11 29 29 H 1.08998 * 117.49732 * 145.02394 * 17 13 11 30 30 H 1.09010 * 117.49547 * 214.97733 * 18 13 11 31 31 H 1.08997 * 117.50432 * 359.96834 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5613 -5.1050 0.0061 13 6 2.7329 -6.0289 0.0125 14 6 2.1125 -7.4274 0.0180 15 6 0.8025 -7.6221 -0.7482 16 6 0.8007 -7.6152 0.7826 17 6 4.0431 -5.8339 0.7782 18 6 4.0445 -5.8411 -0.7525 19 1 -0.4850 0.8400 -0.0004 20 1 0.6246 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8902 22 1 3.1566 -3.4355 0.0009 23 1 2.8208 -8.2558 0.0221 24 1 0.3825 -6.7538 -1.2558 25 1 0.6488 -8.5788 -1.2473 26 1 0.6457 -8.5675 1.2898 27 1 0.3798 -6.7427 1.2821 28 1 4.1966 -4.8773 1.2776 29 1 4.4633 -6.7021 1.2859 30 1 4.4657 -6.7141 -1.2513 31 1 4.1990 -4.8893 -1.2608 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897592744.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:26 Heat of formation + Delta-G solvation = -13.822654 kcal Electronic energy + Delta-G solvation = -13656.331130 eV Core-core repulsion = 11324.323105 eV Total energy + Delta-G solvation = -2332.008026 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.35089 -38.13297 -36.84625 -35.67232 -34.10946 -29.43409 -25.97326 -24.69015 -23.60051 -22.88344 -22.51427 -20.74065 -18.58089 -17.49939 -17.25375 -16.43482 -16.12904 -16.02112 -15.31990 -14.62042 -14.13745 -14.05694 -13.97395 -13.26618 -12.90548 -12.79602 -12.55548 -12.31264 -12.23693 -12.08327 -11.69402 -11.48944 -11.03803 -10.83579 -10.43273 -10.33947 -9.82697 -8.32222 -6.49502 1.41384 1.42793 1.56368 1.59276 2.29316 2.53970 2.71917 3.02669 3.30411 3.49338 3.64376 4.03612 4.07454 4.27243 4.40173 4.40357 4.75043 4.87511 4.87587 5.00348 5.06956 5.08054 5.19197 5.21881 5.37073 5.48282 5.50427 5.67136 5.81900 6.61544 6.88731 7.20231 7.47016 8.80298 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.050965 B = 0.007389 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.262422 B = 3788.433088 C = 4186.057012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.270 3.730 10 N -0.708 5.708 11 C 0.522 3.478 12 O -0.587 6.587 13 C -0.155 4.155 14 C -0.095 4.095 15 C -0.179 4.179 16 C -0.179 4.179 17 C -0.138 4.138 18 C -0.138 4.138 19 H 0.269 0.731 20 H -0.015 1.015 21 H -0.015 1.015 22 H 0.404 0.596 23 H 0.147 0.853 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.183 -12.496 0.040 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.147 3.853 10 N -0.358 5.358 11 C 0.311 3.689 12 O -0.469 6.469 13 C -0.158 4.158 14 C -0.113 4.113 15 C -0.216 4.216 16 C -0.216 4.216 17 C -0.175 4.175 18 C -0.175 4.175 19 H 0.078 0.922 20 H 0.003 0.997 21 H 0.003 0.997 22 H 0.240 0.760 23 H 0.165 0.835 24 H 0.086 0.914 25 H 0.130 0.870 26 H 0.130 0.870 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.184 -12.507 0.038 16.129 hybrid contribution -0.232 1.256 0.000 1.278 sum 9.952 -11.251 0.038 15.021 Atomic orbital electron populations 1.70148 1.08339 1.28573 1.49895 1.26099 0.95795 1.04001 0.93725 0.85084 0.79087 0.77122 0.77766 1.17548 1.20341 1.20352 1.21636 0.94254 0.90559 1.53033 0.89896 1.18508 0.88620 0.84327 0.93865 1.46176 1.10986 1.05513 1.73108 1.20401 0.89042 0.84071 0.75427 1.90583 1.18914 1.85034 1.52358 1.21026 0.89404 0.92833 1.12550 1.21545 0.90617 0.93791 1.05387 1.22968 1.01316 1.02449 0.94890 1.22967 1.01290 1.02467 0.94906 1.23257 0.94302 1.05074 0.94869 1.23257 0.94281 1.05110 0.94851 0.92198 0.99685 0.99680 0.76011 0.83545 0.91381 0.87032 0.87041 0.91385 0.88497 0.84732 0.84731 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.99 42.62 29.54 68.60 2.03 44.65 16 4 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.56 -30.88 9.28 25.60 0.24 -30.64 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.27 15.25 5.43 85.63 0.46 15.71 16 10 N -0.71 -31.33 5.35 -466.79 -2.50 -33.82 16 11 C 0.52 22.13 7.24 87.66 0.63 22.77 16 12 O -0.59 -29.83 11.83 -3.04 -0.04 -29.86 16 13 C -0.15 -4.52 2.46 -52.93 -0.13 -4.65 16 14 C -0.10 -2.49 5.84 -10.80 -0.06 -2.55 16 15 C -0.18 -5.44 9.66 30.62 0.30 -5.15 16 16 C -0.18 -5.45 9.66 30.62 0.30 -5.15 16 17 C -0.14 -2.90 9.60 30.62 0.29 -2.60 16 18 C -0.14 -2.90 9.60 30.62 0.29 -2.60 16 19 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 20 H -0.01 -0.94 8.14 -2.38 -0.02 -0.96 16 21 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 22 H 0.40 15.00 6.51 -92.71 -0.60 14.39 16 23 H 0.15 2.63 8.14 -2.39 -0.02 2.61 16 24 H 0.07 2.66 6.28 -2.39 -0.02 2.65 16 25 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 26 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.07 2.66 6.28 -2.39 -0.02 2.65 16 28 H 0.10 2.17 7.55 -2.39 -0.02 2.15 16 29 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.10 2.17 7.55 -2.39 -0.02 2.15 16 Total: -1.00 -71.88 262.62 3.09 -68.79 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.52 Total: 21.11 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 2.78 Total: -14.22 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -2.21 Total: -90.46 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.04 Total: -29.86 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -71.88 3.09 -68.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897592744.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.970 kcal (2) G-P(sol) polarization free energy of solvation -71.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds