Wall clock time and date at job start Sun Mar 29 2020 21:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.51282 * 137.67192 * 2 1 4 4 N 1.47125 * 87.69728 * 205.78304 * 3 2 1 5 5 C 1.34777 * 136.18743 * 153.54937 * 4 3 2 6 6 O 1.21278 * 119.99854 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.46912 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47116 * 59.99479 * 14 12 10 16 16 H 1.48490 * 109.47381 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46756 * 300.00079 * 14 12 10 18 18 C 1.47129 * 87.63140 * 333.80835 * 4 3 2 19 19 H 1.08003 * 120.00396 * 0.02562 * 1 2 3 20 20 H 1.08000 * 120.00324 * 180.02562 * 1 2 3 21 21 H 1.08997 * 113.51267 * 91.08137 * 3 2 1 22 22 H 1.08997 * 113.57281 * 320.49806 * 3 2 1 23 23 H 1.09002 * 109.47152 * 60.00245 * 7 5 4 24 24 H 1.09001 * 109.46980 * 300.00345 * 7 5 4 25 25 H 1.09001 * 109.47194 * 299.99742 * 8 7 5 26 26 H 1.08992 * 109.47399 * 59.99914 * 8 7 5 27 27 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 28 28 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 29 29 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 30 30 H 1.09004 * 113.51675 * 140.89338 * 18 4 3 31 31 H 1.08997 * 113.51359 * 271.48943 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4284 1.0187 0.0000 4 7 3.2761 0.0003 -0.6394 5 6 4.3521 0.0004 -1.4509 6 8 4.8365 1.0508 -1.8155 7 6 4.9534 -1.3046 -1.9054 8 6 6.1549 -1.0248 -2.8104 9 6 6.7649 -2.3497 -3.2723 10 6 7.9479 -2.0742 -4.1642 11 1 8.2356 -1.0558 -4.3805 12 6 8.6631 -3.1220 -4.7043 13 7 8.3130 -4.3620 -4.4406 14 14 10.1299 -2.7804 -5.8094 15 1 11.1465 -2.0026 -5.0564 16 1 10.7219 -4.0663 -6.2577 17 1 9.6869 -2.0006 -6.9930 18 6 2.4245 -1.0185 -0.0057 19 1 -0.5401 0.9353 -0.0004 20 1 -0.5401 -0.9353 0.0004 21 1 2.7626 1.2976 0.9993 22 1 2.2316 1.8821 -0.6355 23 1 4.2072 -1.8757 -2.4577 24 1 5.2789 -1.8767 -1.0365 25 1 5.8298 -0.4525 -3.6793 26 1 6.9009 -0.4539 -2.2578 27 1 7.0901 -2.9223 -2.4037 28 1 6.0186 -2.9203 -3.8251 29 1 8.8164 -5.0991 -4.8203 30 1 2.2234 -1.8771 -0.6465 31 1 2.7576 -1.3043 0.9920 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898703623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:16 Heat of formation + Delta-G solvation = 10.644542 kcal Electronic energy + Delta-G solvation = -12997.592472 eV Core-core repulsion = 10666.645423 eV Total energy + Delta-G solvation = -2330.947049 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.29110 -37.88071 -34.16394 -32.19690 -31.77137 -28.51709 -26.61298 -26.25802 -23.45398 -20.29336 -19.24684 -18.43120 -16.76154 -16.24539 -16.02835 -15.60474 -14.62989 -14.47466 -14.29715 -13.58885 -13.01987 -12.89126 -12.33782 -12.14541 -11.78655 -11.33248 -10.76893 -10.66647 -10.57443 -10.52873 -9.91735 -9.65807 -9.53960 -9.23886 -9.00740 -8.75350 -8.30002 -5.95915 -3.97354 1.77953 2.82233 3.04874 3.38141 3.41312 3.45377 3.89654 4.42686 4.51201 4.81533 5.19066 5.23615 5.39777 5.40010 5.41541 5.52847 5.66453 5.74628 5.87310 6.01224 6.26109 6.42854 6.73939 6.94567 7.16874 7.71246 7.77960 7.85210 8.04745 8.38473 8.48663 9.09381 9.66441 11.15624 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.076417 B = 0.005071 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.322399 B = 5520.667468 C = 5778.346141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.174 4.174 3 C 0.132 3.868 4 N -0.653 5.653 5 C 0.545 3.455 6 O -0.535 6.535 7 C -0.130 4.130 8 C -0.096 4.096 9 C 0.021 3.979 10 C -0.519 4.519 11 H 0.056 0.944 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C 0.133 3.867 19 H 0.111 0.889 20 H 0.113 0.887 21 H 0.092 0.908 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.086 0.914 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.103 5.401 10.629 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.175 4.175 3 C 0.010 3.990 4 N -0.391 5.391 5 C 0.337 3.663 6 O -0.410 6.410 7 C -0.169 4.169 8 C -0.134 4.134 9 C -0.016 4.016 10 C -0.557 4.557 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C 0.010 3.990 19 H 0.129 0.871 20 H 0.131 0.869 21 H 0.109 0.891 22 H 0.098 0.902 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.528 5.787 10.217 18.680 hybrid contribution 0.766 0.029 -0.512 0.922 sum -13.762 5.816 9.705 17.816 Atomic orbital electron populations 1.22853 0.92718 1.02743 0.99927 1.22922 0.94025 0.98625 1.01934 1.22061 0.85597 0.93292 0.98061 1.49636 1.30334 1.10539 1.48570 1.20919 0.76464 0.92675 0.76207 1.90689 1.59759 1.34382 1.56165 1.21803 1.00212 0.93133 1.01781 1.21480 0.93793 1.00867 0.97257 1.19125 0.95417 0.90912 0.96152 1.21238 1.12792 0.92720 1.28945 0.92608 1.25017 0.97668 0.95114 0.96674 1.69958 1.40535 0.98188 1.45103 0.86641 0.82880 0.77331 0.81068 1.20222 1.21322 1.20224 1.22077 0.85537 0.92954 0.98419 0.87075 0.86906 0.89067 0.90162 0.89399 0.89375 0.92636 0.92642 0.96577 0.96579 0.93020 0.89609 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 14.71 29.02 0.43 -0.57 16 2 C -0.17 -1.56 7.52 -100.67 -0.76 -2.31 16 3 C 0.13 1.44 8.59 -10.21 -0.09 1.35 16 4 N -0.65 -9.07 3.71 -191.60 -0.71 -9.78 16 5 C 0.55 9.78 8.08 -10.98 -0.09 9.69 16 6 O -0.53 -11.67 16.76 5.56 0.09 -11.58 16 7 C -0.13 -2.30 5.54 -27.88 -0.15 -2.46 16 8 C -0.10 -2.16 4.44 -26.73 -0.12 -2.28 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 14 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 C 0.13 1.29 8.37 -10.35 -0.09 1.20 16 19 H 0.11 0.63 8.06 -52.48 -0.42 0.21 16 20 H 0.11 0.62 8.06 -52.49 -0.42 0.19 16 21 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 24 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 25 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 26 H 0.05 1.29 8.10 -51.93 -0.42 0.87 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 274.91 15.07 4.14 4.14 Total: -1.00 -34.10 274.91 -6.78 -40.88 By element: Atomic # 1 Polarization: -0.68 SS G_CDS: -4.61 Total: -5.29 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -1.42 Total: -8.98 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.03 Total: -36.41 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.10 -6.78 -40.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898703623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.529 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds