Wall clock time and date at job start Sun Mar 29 2020 21:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.51282 * 137.67192 * 2 1 4 4 N 1.47125 * 87.69728 * 205.78304 * 3 2 1 5 5 C 1.34777 * 136.18743 * 153.54937 * 4 3 2 6 6 O 1.21278 * 119.99854 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00161 * 180.02562 * 5 4 3 8 8 C 1.53000 * 109.46912 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46886 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47291 * 179.97438 * 9 8 7 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99563 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00432 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47116 * 59.99479 * 14 12 10 16 16 H 1.48490 * 109.47381 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46756 * 300.00079 * 14 12 10 18 18 C 1.47129 * 87.63140 * 333.80835 * 4 3 2 19 19 H 1.08003 * 120.00396 * 0.02562 * 1 2 3 20 20 H 1.08000 * 120.00324 * 180.02562 * 1 2 3 21 21 H 1.08997 * 113.51267 * 91.08137 * 3 2 1 22 22 H 1.08997 * 113.57281 * 320.49806 * 3 2 1 23 23 H 1.09002 * 109.47152 * 60.00245 * 7 5 4 24 24 H 1.09001 * 109.46980 * 300.00345 * 7 5 4 25 25 H 1.09001 * 109.47194 * 299.99742 * 8 7 5 26 26 H 1.08992 * 109.47399 * 59.99914 * 8 7 5 27 27 H 1.09001 * 109.47109 * 299.99380 * 9 8 7 28 28 H 1.09002 * 109.47508 * 59.99571 * 9 8 7 29 29 H 0.97000 * 119.99425 * 180.02562 * 13 12 10 30 30 H 1.09004 * 113.51675 * 140.89338 * 18 4 3 31 31 H 1.08997 * 113.51359 * 271.48943 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.4284 1.0187 0.0000 4 7 3.2761 0.0003 -0.6394 5 6 4.3521 0.0004 -1.4509 6 8 4.8365 1.0508 -1.8155 7 6 4.9534 -1.3046 -1.9054 8 6 6.1549 -1.0248 -2.8104 9 6 6.7649 -2.3497 -3.2723 10 6 7.9479 -2.0742 -4.1642 11 1 8.2356 -1.0558 -4.3805 12 6 8.6631 -3.1220 -4.7043 13 7 8.3130 -4.3620 -4.4406 14 14 10.1299 -2.7804 -5.8094 15 1 11.1465 -2.0026 -5.0564 16 1 10.7219 -4.0663 -6.2577 17 1 9.6869 -2.0006 -6.9930 18 6 2.4245 -1.0185 -0.0057 19 1 -0.5401 0.9353 -0.0004 20 1 -0.5401 -0.9353 0.0004 21 1 2.7626 1.2976 0.9993 22 1 2.2316 1.8821 -0.6355 23 1 4.2072 -1.8757 -2.4577 24 1 5.2789 -1.8767 -1.0365 25 1 5.8298 -0.4525 -3.6793 26 1 6.9009 -0.4539 -2.2578 27 1 7.0901 -2.9223 -2.4037 28 1 6.0186 -2.9203 -3.8251 29 1 8.8164 -5.0991 -4.8203 30 1 2.2234 -1.8771 -0.6465 31 1 2.7576 -1.3043 0.9920 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898703623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:15 Heat of formation + Delta-G solvation = -11.659244 kcal Electronic energy + Delta-G solvation = -12998.559637 eV Core-core repulsion = 10666.645423 eV Total energy + Delta-G solvation = -2331.914213 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.34841 -39.12439 -36.14423 -34.06904 -32.81280 -30.12637 -27.92592 -27.15868 -25.33868 -22.14525 -20.49690 -19.15986 -18.53769 -17.84504 -17.14740 -16.84379 -16.45796 -15.97684 -15.24304 -14.70615 -14.40268 -14.26918 -13.90535 -13.72812 -13.14537 -13.01354 -12.63430 -12.52665 -12.44407 -11.60431 -11.51067 -11.36723 -11.27796 -10.96628 -10.55054 -10.28558 -9.77843 -8.20958 -6.31332 1.11700 1.39352 1.42511 1.50645 1.54520 1.96756 2.41421 3.11895 3.19942 3.52328 3.87055 4.12854 4.18603 4.41473 4.49114 4.53694 4.65233 4.74110 4.85523 4.91838 5.01909 5.08696 5.15972 5.48439 5.51312 5.71923 5.77577 5.84236 6.25878 6.65073 6.83189 7.07014 7.37290 8.90524 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.076417 B = 0.005071 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.322399 B = 5520.667468 C = 5778.346141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.191 4.191 3 C 0.125 3.875 4 N -0.658 5.658 5 C 0.542 3.458 6 O -0.588 6.588 7 C -0.120 4.120 8 C -0.083 4.083 9 C 0.027 3.973 10 C -0.551 4.551 11 H 0.051 0.949 12 C 0.004 3.996 13 N -0.929 5.929 14 Si 0.963 3.037 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.269 1.269 18 C 0.132 3.868 19 H 0.125 0.875 20 H 0.133 0.867 21 H 0.109 0.891 22 H 0.068 0.932 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.002 0.998 28 H 0.001 0.999 29 H 0.265 0.735 30 H 0.094 0.906 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.294 5.148 11.260 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.192 4.192 3 C 0.004 3.996 4 N -0.393 5.393 5 C 0.334 3.666 6 O -0.469 6.469 7 C -0.159 4.159 8 C -0.121 4.121 9 C -0.010 4.010 10 C -0.589 4.589 11 H 0.069 0.931 12 C -0.194 4.194 13 N -0.569 5.569 14 Si 0.787 3.213 15 H -0.194 1.194 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.011 3.989 19 H 0.143 0.857 20 H 0.151 0.849 21 H 0.127 0.873 22 H 0.087 0.913 23 H 0.122 0.878 24 H 0.125 0.875 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.777 5.517 10.891 19.949 hybrid contribution 0.987 0.092 -0.635 1.177 sum -14.790 5.609 10.255 18.852 Atomic orbital electron populations 1.23215 0.91893 1.04397 0.96042 1.22690 0.94231 0.96852 1.05414 1.22308 0.86032 0.93012 0.98275 1.49644 1.28915 1.13666 1.47120 1.20689 0.77374 0.91620 0.76895 1.90656 1.61893 1.35699 1.58642 1.21596 0.98693 0.93910 1.01701 1.21188 0.95316 0.98120 0.97477 1.19003 0.94537 0.92424 0.95002 1.21655 1.14260 0.92822 1.30127 0.93066 1.25909 1.00651 0.94790 0.98017 1.70062 1.41817 0.99067 1.45942 0.85535 0.79035 0.77658 0.79038 1.19417 1.20209 1.19450 1.22368 0.84727 0.92612 0.99230 0.85668 0.84881 0.87349 0.91312 0.87762 0.87522 0.94129 0.94018 0.97950 0.98021 0.92592 0.88732 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 14.71 67.78 1.00 -0.18 16 2 C -0.19 -2.89 7.52 -16.20 -0.12 -3.01 16 3 C 0.13 2.56 8.59 82.05 0.70 3.26 16 4 N -0.66 -17.54 3.71 -878.48 -3.26 -20.80 16 5 C 0.54 19.50 8.08 87.66 0.71 20.21 16 6 O -0.59 -26.48 16.76 -3.02 -0.05 -26.53 16 7 C -0.12 -4.23 5.54 29.85 0.17 -4.07 16 8 C -0.08 -3.83 4.44 30.59 0.14 -3.69 16 9 C 0.03 1.49 4.97 29.85 0.15 1.64 16 10 C -0.55 -33.02 9.11 25.60 0.23 -32.79 16 11 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 12 C 0.00 0.26 5.46 84.65 0.46 0.72 16 13 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 14 Si 0.96 45.64 29.54 68.60 2.03 47.66 16 15 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 18 C 0.13 2.21 8.37 81.95 0.69 2.90 16 19 H 0.13 0.93 8.06 -2.91 -0.02 0.91 16 20 H 0.13 0.85 8.06 -2.91 -0.02 0.83 16 21 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 24 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 25 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 26 H 0.04 2.00 8.10 -2.39 -0.02 1.98 16 27 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.63 274.91 4.21 -70.42 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.09 Total: 0.84 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.12 Total: -15.00 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -2.97 Total: -77.40 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.05 Total: -26.53 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.63 4.21 -70.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898703623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.763 kcal (2) G-P(sol) polarization free energy of solvation -74.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds