Wall clock time and date at job start Sun Mar 29 2020 21:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37094 * 119.99903 * 2 1 4 4 H 1.08000 * 120.00190 * 169.25182 * 3 2 1 5 5 C 1.38949 * 120.00157 * 349.25251 * 3 2 1 6 6 N 1.31414 * 119.99997 * 8.51153 * 5 3 2 7 7 Si 1.86799 * 120.00091 * 188.51580 * 5 3 2 8 8 H 1.48496 * 109.47311 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47135 * 119.99971 * 7 5 3 10 10 H 1.48501 * 109.47114 * 239.99962 * 7 5 3 11 11 C 1.34777 * 119.99961 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00166 * 4.26138 * 11 2 1 13 13 C 1.50707 * 120.00029 * 184.26155 * 11 2 1 14 14 C 1.53006 * 110.94154 * 61.33579 * 13 11 2 15 15 C 1.54631 * 111.03885 * 185.32385 * 13 11 2 16 16 C 1.51101 * 104.82457 * 93.45551 * 15 13 11 17 17 C 1.30528 * 111.10566 * 16.38150 * 16 15 13 18 18 C 1.51101 * 111.10065 * 359.97438 * 17 16 15 19 19 H 1.09003 * 109.46798 * 184.02720 * 1 2 3 20 20 H 1.09000 * 109.47253 * 304.02563 * 1 2 3 21 21 H 1.08996 * 109.47600 * 64.02933 * 1 2 3 22 22 H 0.96997 * 119.99752 * 179.97438 * 6 5 3 23 23 H 1.09000 * 109.46503 * 189.28907 * 14 13 11 24 24 H 1.09001 * 109.47142 * 309.28588 * 14 13 11 25 25 H 1.08997 * 109.46873 * 69.29128 * 14 13 11 26 26 H 1.08995 * 110.38858 * 334.58879 * 15 13 11 27 27 H 1.08993 * 110.38880 * 212.32191 * 15 13 11 28 28 H 1.08003 * 124.45253 * 196.35752 * 16 15 13 29 29 H 1.08001 * 124.45369 * 179.97438 * 17 16 15 30 30 H 1.09002 * 110.38778 * 102.37823 * 18 17 16 31 31 H 1.09005 * 110.38572 * 224.63625 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.2162 1.1955 0.1744 5 6 1.4740 2.3801 -0.2244 6 7 0.1607 2.3921 -0.2700 7 14 2.4313 3.9665 -0.4614 8 1 3.8863 3.6857 -0.3651 9 1 2.1239 4.5351 -1.7983 10 1 2.0448 4.9399 0.5914 11 6 2.1388 -1.1672 -0.0005 12 8 1.5349 -2.2161 -0.0790 13 6 3.6428 -1.1691 0.0965 14 6 4.1070 -0.5319 1.4078 15 6 4.2071 -2.6007 -0.0554 16 6 4.5232 -2.7376 -1.5266 17 6 4.5623 -1.5704 -2.1096 18 6 4.2781 -0.4605 -1.1244 19 1 -0.3633 -1.0252 0.0722 20 1 -0.3634 0.5750 0.8517 21 1 -0.3634 0.4500 -0.9238 22 1 -0.3115 3.2249 -0.4262 23 1 5.1881 -0.3952 1.3825 24 1 3.6212 0.4357 1.5336 25 1 3.8425 -1.1825 2.2414 26 1 3.4605 -3.3367 0.2426 27 1 5.1126 -2.7171 0.5399 28 1 4.6947 -3.6778 -2.0298 29 1 4.7704 -1.4179 -3.1583 30 1 5.2042 0.0352 -0.8333 31 1 3.5818 0.2596 -1.5541 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931239830.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:44 Heat of formation + Delta-G solvation = -2.302893 kcal Electronic energy + Delta-G solvation = -14512.883444 eV Core-core repulsion = 12181.374953 eV Total energy + Delta-G solvation = -2331.508492 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.62566 -36.67977 -34.75429 -31.61455 -30.91104 -27.66856 -26.14404 -25.06306 -24.36440 -20.74560 -18.56140 -18.42099 -16.98702 -15.50982 -15.07752 -14.41647 -14.14373 -13.84767 -13.28364 -12.54591 -12.09198 -12.00874 -11.73634 -11.58902 -11.40100 -11.35533 -10.98806 -10.62980 -10.55440 -10.40885 -10.36985 -10.12003 -9.64567 -9.04211 -8.43762 -8.13718 -7.81284 -6.28050 -3.85636 2.82328 3.08466 3.18698 3.21332 3.95478 4.06417 4.84908 5.07339 5.22390 5.35126 5.69021 5.81281 6.00508 6.09990 6.25627 6.38200 6.38830 6.46302 6.61941 6.75312 6.82881 6.90932 7.04177 7.12716 7.30018 7.43203 7.48457 7.54782 7.80226 8.43362 9.09311 9.60560 9.99957 10.66431 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.034733 B = 0.013007 C = 0.011020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.966136 B = 2152.111984 C = 2540.338703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.446 5.446 3 C -0.333 4.333 4 H 0.114 0.886 5 C 0.032 3.968 6 N -0.874 5.874 7 Si 0.919 3.081 8 H -0.267 1.267 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.467 3.533 12 O -0.612 6.612 13 C -0.063 4.063 14 C -0.145 4.145 15 C -0.084 4.084 16 C -0.164 4.164 17 C -0.170 4.170 18 C -0.094 4.094 19 H 0.032 0.968 20 H 0.060 0.940 21 H 0.065 0.935 22 H 0.265 0.735 23 H 0.051 0.949 24 H 0.087 0.913 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 -1.606 -0.212 7.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.163 5.163 3 C -0.460 4.460 4 H 0.132 0.868 5 C -0.171 4.171 6 N -0.514 5.514 7 Si 0.746 3.254 8 H -0.191 1.191 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.255 3.745 12 O -0.499 6.499 13 C -0.066 4.066 14 C -0.202 4.202 15 C -0.121 4.121 16 C -0.182 4.182 17 C -0.188 4.188 18 C -0.131 4.131 19 H 0.051 0.949 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.106 0.894 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.089 0.911 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.867 -1.918 -0.262 7.135 hybrid contribution 0.350 0.996 -0.238 1.082 sum 7.218 -0.922 -0.501 7.293 Atomic orbital electron populations 1.21525 0.80030 0.97270 1.03182 1.43633 1.06032 1.04734 1.61874 1.20091 0.94389 0.83312 1.48218 0.86842 1.25346 0.95677 0.99616 0.96508 1.70240 1.06298 1.27247 1.47599 0.85974 0.79744 0.81548 0.78171 1.19097 1.20551 1.20709 1.19613 0.88475 0.83603 0.82815 1.90477 1.69815 1.31772 1.57877 1.21210 0.93842 0.95482 0.96110 1.21996 1.00201 1.02702 0.95280 1.21310 0.99850 0.97021 0.93929 1.23160 1.01003 0.97501 0.96547 1.23291 1.01155 0.95615 0.98728 1.21619 1.00357 0.97494 0.93600 0.94939 0.92125 0.91675 0.92389 0.93020 0.89424 0.93168 0.89878 0.91431 0.86757 0.86640 0.91103 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.17 8.87 59.84 0.53 3.71 16 2 N -0.45 -11.54 3.02 -122.20 -0.37 -11.91 16 3 C -0.33 -8.27 6.65 -14.94 -0.10 -8.37 16 4 H 0.11 2.61 3.84 -52.49 -0.20 2.41 16 5 C 0.03 0.80 5.46 -17.47 -0.10 0.71 16 6 N -0.87 -22.78 9.52 55.50 0.53 -22.26 16 7 Si 0.92 19.22 29.56 -169.99 -5.03 14.19 16 8 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 9 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 11 C 0.47 11.70 6.52 -10.98 -0.07 11.63 16 12 O -0.61 -16.91 14.86 5.55 0.08 -16.82 16 13 C -0.06 -1.29 0.59 -153.85 -0.09 -1.39 16 14 C -0.14 -2.64 8.15 37.16 0.30 -2.34 16 15 C -0.08 -1.55 5.76 -26.83 -0.15 -1.71 16 16 C -0.16 -2.85 10.78 -35.70 -0.38 -3.24 16 17 C -0.17 -2.98 10.78 -35.70 -0.38 -3.37 16 18 C -0.09 -1.78 4.78 -26.74 -0.13 -1.91 16 19 H 0.03 0.82 6.93 -51.93 -0.36 0.46 16 20 H 0.06 1.58 7.23 -51.93 -0.38 1.21 16 21 H 0.06 1.73 6.91 -51.93 -0.36 1.38 16 22 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 23 H 0.05 0.80 7.92 -51.93 -0.41 0.38 16 24 H 0.09 1.74 5.21 -51.93 -0.27 1.47 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.69 6.94 -51.93 -0.36 1.33 16 27 H 0.07 1.08 7.89 -51.93 -0.41 0.67 16 28 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 29 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.07 1.20 7.74 -51.93 -0.40 0.80 16 31 H 0.10 2.06 6.03 -51.93 -0.31 1.75 16 LS Contribution 245.82 15.07 3.70 3.70 Total: -1.00 -28.64 245.82 -5.52 -34.16 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.87 Total: 5.21 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.57 Total: -6.27 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.16 Total: -34.17 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.08 Total: -16.82 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.64 -5.52 -34.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931239830.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.853 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds