Wall clock time and date at job start Sun Mar 29 2020 21:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37094 * 119.99903 * 2 1 4 4 H 1.08000 * 120.00190 * 169.25182 * 3 2 1 5 5 C 1.38949 * 120.00157 * 349.25251 * 3 2 1 6 6 N 1.31414 * 119.99997 * 8.51153 * 5 3 2 7 7 Si 1.86799 * 120.00091 * 188.51580 * 5 3 2 8 8 H 1.48496 * 109.47311 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47135 * 119.99971 * 7 5 3 10 10 H 1.48501 * 109.47114 * 239.99962 * 7 5 3 11 11 C 1.34777 * 119.99961 * 180.02562 * 2 1 3 12 12 O 1.21290 * 120.00166 * 4.26138 * 11 2 1 13 13 C 1.50707 * 120.00029 * 184.26155 * 11 2 1 14 14 C 1.53006 * 110.94154 * 61.33579 * 13 11 2 15 15 C 1.54631 * 111.03885 * 185.32385 * 13 11 2 16 16 C 1.51101 * 104.82457 * 93.45551 * 15 13 11 17 17 C 1.30528 * 111.10566 * 16.38150 * 16 15 13 18 18 C 1.51101 * 111.10065 * 359.97438 * 17 16 15 19 19 H 1.09003 * 109.46798 * 184.02720 * 1 2 3 20 20 H 1.09000 * 109.47253 * 304.02563 * 1 2 3 21 21 H 1.08996 * 109.47600 * 64.02933 * 1 2 3 22 22 H 0.96997 * 119.99752 * 179.97438 * 6 5 3 23 23 H 1.09000 * 109.46503 * 189.28907 * 14 13 11 24 24 H 1.09001 * 109.47142 * 309.28588 * 14 13 11 25 25 H 1.08997 * 109.46873 * 69.29128 * 14 13 11 26 26 H 1.08995 * 110.38858 * 334.58879 * 15 13 11 27 27 H 1.08993 * 110.38880 * 212.32191 * 15 13 11 28 28 H 1.08003 * 124.45253 * 196.35752 * 16 15 13 29 29 H 1.08001 * 124.45369 * 179.97438 * 17 16 15 30 30 H 1.09002 * 110.38778 * 102.37823 * 18 17 16 31 31 H 1.09005 * 110.38572 * 224.63625 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.2162 1.1955 0.1744 5 6 1.4740 2.3801 -0.2244 6 7 0.1607 2.3921 -0.2700 7 14 2.4313 3.9665 -0.4614 8 1 3.8863 3.6857 -0.3651 9 1 2.1239 4.5351 -1.7983 10 1 2.0448 4.9399 0.5914 11 6 2.1388 -1.1672 -0.0005 12 8 1.5349 -2.2161 -0.0790 13 6 3.6428 -1.1691 0.0965 14 6 4.1070 -0.5319 1.4078 15 6 4.2071 -2.6007 -0.0554 16 6 4.5232 -2.7376 -1.5266 17 6 4.5623 -1.5704 -2.1096 18 6 4.2781 -0.4605 -1.1244 19 1 -0.3633 -1.0252 0.0722 20 1 -0.3634 0.5750 0.8517 21 1 -0.3634 0.4500 -0.9238 22 1 -0.3115 3.2249 -0.4262 23 1 5.1881 -0.3952 1.3825 24 1 3.6212 0.4357 1.5336 25 1 3.8425 -1.1825 2.2414 26 1 3.4605 -3.3367 0.2426 27 1 5.1126 -2.7171 0.5399 28 1 4.6947 -3.6778 -2.0298 29 1 4.7704 -1.4179 -3.1583 30 1 5.2042 0.0352 -0.8333 31 1 3.5818 0.2596 -1.5541 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931239830.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:43 Heat of formation + Delta-G solvation = -19.000003 kcal Electronic energy + Delta-G solvation = -14513.607485 eV Core-core repulsion = 12181.374953 eV Total energy + Delta-G solvation = -2332.232533 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.35647 -38.38781 -36.75552 -33.46174 -32.52242 -29.19609 -28.05480 -26.77481 -26.04538 -22.51551 -20.43708 -19.84451 -18.72678 -17.32726 -16.62047 -16.09390 -16.05420 -15.72556 -15.04191 -14.13396 -13.75903 -13.62623 -13.39053 -13.29900 -13.07423 -12.96303 -12.71744 -12.47488 -12.16721 -11.99083 -11.93659 -11.75950 -11.25309 -10.96717 -10.22932 -9.90480 -9.60931 -8.19225 -5.83088 1.43004 1.48747 1.49019 1.61595 2.06128 2.30362 3.02059 3.19190 3.74570 3.89300 4.13249 4.39553 4.47258 4.66276 4.77529 4.85997 4.95156 4.99937 5.06103 5.14350 5.17462 5.30214 5.34763 5.40577 5.43611 5.59631 5.73471 5.83482 6.14373 6.47351 7.15234 7.64751 8.03749 8.77470 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.034733 B = 0.013007 C = 0.011020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.966136 B = 2152.111984 C = 2540.338703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.137 3.863 2 N -0.459 5.459 3 C -0.342 4.342 4 H 0.134 0.866 5 C -0.017 4.017 6 N -0.908 5.908 7 Si 0.988 3.012 8 H -0.246 1.246 9 H -0.283 1.283 10 H -0.282 1.282 11 C 0.453 3.547 12 O -0.647 6.647 13 C -0.068 4.068 14 C -0.139 4.139 15 C -0.083 4.083 16 C -0.169 4.169 17 C -0.178 4.178 18 C -0.092 4.092 19 H 0.025 0.975 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.266 0.734 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.098 0.902 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.959 -1.080 -0.393 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.176 5.176 3 C -0.469 4.469 4 H 0.151 0.849 5 C -0.217 4.217 6 N -0.548 5.548 7 Si 0.811 3.189 8 H -0.169 1.169 9 H -0.209 1.209 10 H -0.208 1.208 11 C 0.243 3.757 12 O -0.537 6.537 13 C -0.071 4.071 14 C -0.197 4.197 15 C -0.120 4.120 16 C -0.186 4.186 17 C -0.196 4.196 18 C -0.129 4.129 19 H 0.044 0.956 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.107 0.893 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.117 0.883 28 H 0.156 0.844 29 H 0.156 0.844 30 H 0.116 0.884 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.478 -1.396 -0.437 9.590 hybrid contribution -0.525 0.781 -0.165 0.956 sum 8.953 -0.615 -0.601 8.994 Atomic orbital electron populations 1.21277 0.81068 0.96322 1.02022 1.43923 1.05859 1.05812 1.61988 1.20552 0.95277 0.82951 1.48118 0.84914 1.26281 0.96536 1.02852 0.95998 1.70356 1.07871 1.28119 1.48477 0.84926 0.79460 0.77014 0.77484 1.16877 1.20945 1.20772 1.20567 0.90746 0.82678 0.81692 1.90441 1.71209 1.32855 1.59211 1.21300 0.90286 0.97538 0.97995 1.21959 1.02272 1.01377 0.94044 1.21333 1.00299 0.94871 0.95507 1.23379 1.00672 0.98616 0.95961 1.23466 1.01402 0.95065 0.99648 1.21603 1.00663 0.97489 0.93180 0.95588 0.93046 0.92990 0.92376 0.89350 0.91232 0.93051 0.92320 0.88290 0.84409 0.84424 0.88363 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.31 8.87 127.77 1.13 8.44 16 2 N -0.46 -24.09 3.02 -658.90 -1.99 -26.08 16 3 C -0.34 -16.86 6.65 84.04 0.56 -16.30 16 4 H 0.13 5.89 3.84 -2.91 -0.01 5.88 16 5 C -0.02 -0.82 5.46 84.93 0.46 -0.35 16 6 N -0.91 -47.96 9.52 21.66 0.21 -47.75 16 7 Si 0.99 38.48 29.56 68.60 2.03 40.51 16 8 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 9 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 11 C 0.45 22.81 6.52 87.66 0.57 23.39 16 12 O -0.65 -36.45 14.86 -3.06 -0.05 -36.50 16 13 C -0.07 -2.67 0.59 -51.76 -0.03 -2.70 16 14 C -0.14 -4.73 8.15 71.98 0.59 -4.14 16 15 C -0.08 -2.88 5.76 30.53 0.18 -2.71 16 16 C -0.17 -5.39 10.78 26.26 0.28 -5.10 16 17 C -0.18 -5.74 10.78 26.26 0.28 -5.46 16 18 C -0.09 -3.27 4.78 30.59 0.15 -3.13 16 19 H 0.03 1.37 6.93 -2.39 -0.02 1.36 16 20 H 0.05 2.79 7.23 -2.39 -0.02 2.77 16 21 H 0.05 2.88 6.91 -2.39 -0.02 2.86 16 22 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 23 H 0.09 2.34 7.92 -2.39 -0.02 2.32 16 24 H 0.07 2.62 5.21 -2.39 -0.01 2.61 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 2.34 6.94 -2.39 -0.02 2.32 16 27 H 0.10 2.78 7.89 -2.39 -0.02 2.77 16 28 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 30 H 0.10 2.92 7.74 -2.39 -0.02 2.90 16 31 H 0.07 2.88 6.03 -2.38 -0.01 2.87 16 Total: -1.00 -61.75 245.82 5.49 -56.26 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 1.12 Total: 21.62 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.17 Total: -8.06 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.79 Total: -73.84 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.05 Total: -36.50 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -61.75 5.49 -56.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931239830.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.261 kcal (2) G-P(sol) polarization free energy of solvation -61.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds