Wall clock time and date at job start Sun Mar 29 2020 21:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37094 * 119.99642 * 2 1 4 4 H 1.08004 * 119.99802 * 155.39989 * 3 2 1 5 5 C 1.38957 * 120.00537 * 335.12831 * 3 2 1 6 6 N 1.31415 * 119.99296 * 352.82300 * 5 3 2 7 7 Si 1.86796 * 120.00248 * 172.82620 * 5 3 2 8 8 H 1.48503 * 109.47229 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47100 * 120.00076 * 7 5 3 10 10 H 1.48508 * 109.46997 * 239.99926 * 7 5 3 11 11 C 1.34774 * 119.99979 * 180.02562 * 2 1 3 12 12 O 1.21294 * 119.99445 * 185.54392 * 11 2 1 13 13 C 1.50691 * 120.00217 * 5.55393 * 11 2 1 14 14 C 1.53002 * 110.35014 * 55.06239 * 13 11 2 15 15 C 1.51108 * 110.38992 * 177.35270 * 13 11 2 16 16 C 1.30524 * 111.10765 * 102.36933 * 15 13 11 17 17 C 1.51101 * 111.10101 * 0.02562 * 16 15 13 18 18 C 1.54636 * 104.72991 * 16.43754 * 17 16 15 19 19 H 1.09003 * 109.47402 * 84.55206 * 1 2 3 20 20 H 1.08998 * 109.47073 * 204.55051 * 1 2 3 21 21 H 1.09001 * 109.47575 * 324.55102 * 1 2 3 22 22 H 0.97005 * 119.99385 * 180.02562 * 6 5 3 23 23 H 1.08997 * 109.46910 * 62.65433 * 14 13 11 24 24 H 1.09000 * 109.47156 * 182.65823 * 14 13 11 25 25 H 1.09002 * 109.46689 * 302.65388 * 14 13 11 26 26 H 1.07998 * 124.44274 * 282.39480 * 15 13 11 27 27 H 1.07991 * 124.44921 * 179.97438 * 16 15 13 28 28 H 1.09007 * 110.38560 * 135.24690 * 17 16 15 29 29 H 1.09001 * 110.38551 * 257.50489 * 17 16 15 30 30 H 1.08999 * 111.03381 * 217.33821 * 18 17 16 31 31 H 1.08996 * 111.03520 * 93.39751 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1569 1.2298 0.3894 5 6 1.5523 2.3349 -0.5061 6 7 0.3888 2.2568 -1.1119 7 14 2.4022 3.9885 -0.3255 8 1 3.6909 3.8072 0.3900 9 1 2.6588 4.5627 -1.6707 10 1 1.5323 4.9103 0.4485 11 6 2.1389 -1.1672 -0.0005 12 8 3.3476 -1.1696 0.1010 13 6 1.3908 -2.4691 -0.1274 14 6 0.5154 -2.4596 -1.3822 15 6 2.3574 -3.6299 -0.1687 16 6 2.4058 -4.2424 0.9829 17 6 1.4790 -3.5927 1.9840 18 6 0.5283 -2.7207 1.1314 19 1 -0.3634 0.0976 -1.0230 20 1 -0.3633 -0.9347 0.4270 21 1 -0.3634 0.8372 0.5960 22 1 -0.0286 3.0579 -1.4655 23 1 1.1477 -2.3708 -2.2656 24 1 -0.0543 -3.3875 -1.4348 25 1 -0.1709 -1.6139 -1.3400 26 1 2.9329 -3.9149 -1.0369 27 1 3.0260 -5.1013 1.1923 28 1 0.9144 -4.3511 2.5266 29 1 2.0454 -2.9726 2.6788 30 1 0.2952 -1.7848 1.6391 31 1 -0.3820 -3.2650 0.8802 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931243122.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:45 Heat of formation + Delta-G solvation = -0.392934 kcal Electronic energy + Delta-G solvation = -14389.841153 eV Core-core repulsion = 12058.415483 eV Total energy + Delta-G solvation = -2331.425670 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.80399 -36.71250 -34.61458 -31.96709 -30.46186 -28.58703 -26.14035 -25.01613 -23.97713 -21.06173 -19.43551 -17.64888 -16.84195 -15.61860 -15.15665 -14.87862 -14.20059 -13.90751 -13.47069 -12.74689 -12.46630 -12.01893 -11.68417 -11.55353 -11.34452 -11.25419 -11.09893 -10.96272 -10.57663 -10.36934 -10.21849 -10.10985 -10.06057 -8.96288 -8.68389 -8.09333 -7.58126 -6.23525 -3.83842 2.75170 3.17983 3.27646 3.35066 3.94992 4.19812 4.94433 5.02886 5.04793 5.22516 5.43160 5.64729 5.81698 5.92672 5.98102 6.06591 6.17032 6.17869 6.36676 6.46061 6.53291 6.59926 6.71994 6.92800 6.95033 7.32122 7.37768 7.61698 8.22208 8.56745 9.25740 9.50312 10.07150 10.78743 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051727 B = 0.009999 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.169950 B = 2799.624454 C = 2981.450852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.448 5.448 3 C -0.303 4.303 4 H 0.096 0.904 5 C 0.029 3.971 6 N -0.887 5.887 7 Si 0.926 3.074 8 H -0.269 1.269 9 H -0.282 1.282 10 H -0.282 1.282 11 C 0.467 3.533 12 O -0.586 6.586 13 C -0.055 4.055 14 C -0.147 4.147 15 C -0.112 4.112 16 C -0.180 4.180 17 C -0.095 4.095 18 C -0.117 4.117 19 H 0.064 0.936 20 H 0.041 0.959 21 H 0.060 0.940 22 H 0.265 0.735 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.608 -8.059 2.335 9.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.167 5.167 3 C -0.431 4.431 4 H 0.114 0.886 5 C -0.173 4.173 6 N -0.527 5.527 7 Si 0.753 3.247 8 H -0.193 1.193 9 H -0.208 1.208 10 H -0.208 1.208 11 C 0.255 3.745 12 O -0.470 6.470 13 C -0.058 4.058 14 C -0.204 4.204 15 C -0.130 4.130 16 C -0.198 4.198 17 C -0.132 4.132 18 C -0.155 4.155 19 H 0.082 0.918 20 H 0.059 0.941 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.160 -7.874 2.305 8.792 hybrid contribution 0.304 0.932 -0.118 0.987 sum -2.857 -6.942 2.187 7.819 Atomic orbital electron populations 1.21900 0.81460 0.98711 1.02161 1.43478 1.05399 1.04532 1.63271 1.19696 1.00473 0.84585 1.38392 0.88575 1.25350 0.96460 0.99977 0.95527 1.69991 1.16525 1.29296 1.36907 0.85867 0.79384 0.81497 0.77991 1.19306 1.20778 1.20766 1.19797 0.87517 0.84235 0.82965 1.90496 1.14426 1.87053 1.55012 1.20565 0.94970 0.93865 0.96432 1.22074 0.99695 1.02383 0.96267 1.22839 0.97693 0.94319 0.98197 1.23067 1.01083 1.00436 0.95245 1.21310 0.96338 0.97971 0.97623 1.22721 0.97343 1.00232 0.95201 0.91774 0.94081 0.92128 0.92471 0.92675 0.92807 0.90234 0.86324 0.86329 0.91808 0.91008 0.89939 0.90795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.27 6.60 59.85 0.40 2.67 16 2 N -0.45 -11.72 3.01 -122.19 -0.37 -12.09 16 3 C -0.30 -8.67 9.29 -14.93 -0.14 -8.81 16 4 H 0.10 2.90 7.39 -52.48 -0.39 2.51 16 5 C 0.03 0.79 5.22 -17.46 -0.09 0.69 16 6 N -0.89 -23.88 10.52 55.50 0.58 -23.29 16 7 Si 0.93 21.23 29.56 -169.99 -5.02 16.20 16 8 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 C 0.47 11.80 6.39 -10.99 -0.07 11.73 16 12 O -0.59 -16.97 15.80 5.55 0.09 -16.88 16 13 C -0.05 -1.07 0.54 -155.75 -0.08 -1.15 16 14 C -0.15 -2.57 8.20 37.16 0.30 -2.27 16 15 C -0.11 -2.04 8.69 -35.69 -0.31 -2.35 16 16 C -0.18 -2.92 10.78 -35.70 -0.38 -3.31 16 17 C -0.10 -1.49 6.81 -26.83 -0.18 -1.67 16 18 C -0.12 -1.94 4.88 -25.00 -0.12 -2.06 16 19 H 0.06 1.50 6.22 -51.93 -0.32 1.18 16 20 H 0.04 0.77 3.63 -51.93 -0.19 0.58 16 21 H 0.06 1.44 7.33 -51.93 -0.38 1.06 16 22 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 0.78 8.10 -51.93 -0.42 0.35 16 25 H 0.08 1.44 4.41 -51.93 -0.23 1.21 16 26 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 27 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.45 6.04 -51.93 -0.31 1.13 16 31 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 LS Contribution 247.46 15.07 3.73 3.73 Total: -1.00 -31.35 247.46 -5.58 -36.92 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.90 Total: 1.93 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.68 Total: -6.53 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.22 Total: -35.38 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.09 Total: -16.88 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.35 -5.58 -36.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931243122.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.531 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds