Wall clock time and date at job start Sun Mar 29 2020 21:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 110.34417 * 2 1 4 4 O 1.21280 * 120.00014 * 122.28525 * 3 2 1 5 5 N 1.34774 * 119.99902 * 302.27747 * 3 2 1 6 6 C 1.46498 * 120.00067 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.46983 * 180.02562 * 6 5 3 8 8 H 1.07999 * 120.00538 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99661 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00186 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00030 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 89.99863 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00044 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00037 * 11 9 7 15 15 C 1.51095 * 110.48388 * 237.64169 * 2 1 3 16 16 C 1.30535 * 111.10341 * 257.57494 * 15 2 1 17 17 C 1.51103 * 111.10318 * 0.02562 * 16 15 2 18 18 C 1.54632 * 104.72583 * 343.55963 * 17 16 15 19 19 H 1.09009 * 109.46571 * 59.30397 * 1 2 3 20 20 H 1.08996 * 109.47307 * 179.29881 * 1 2 3 21 21 H 1.08997 * 109.47989 * 299.30908 * 1 2 3 22 22 H 0.97003 * 119.99826 * 0.02562 * 5 3 2 23 23 H 1.09002 * 109.46847 * 60.00131 * 6 5 3 24 24 H 1.09000 * 109.46849 * 300.00511 * 6 5 3 25 25 H 0.97001 * 119.99697 * 359.97438 * 10 9 7 26 26 H 1.07998 * 124.45113 * 77.56281 * 15 2 1 27 27 H 1.08000 * 124.44405 * 180.02562 * 16 15 2 28 28 H 1.09001 * 110.38523 * 224.74693 * 17 16 15 29 29 H 1.08999 * 110.38694 * 102.37481 * 17 16 15 30 30 H 1.09001 * 111.03801 * 266.59857 * 18 17 16 31 31 H 1.09000 * 111.03618 * 142.66643 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7907 1.7866 0.8879 5 7 1.7038 2.2615 -0.9868 6 6 2.2135 3.6350 -0.9872 7 6 1.6761 4.3699 -2.1880 8 1 1.0208 3.8644 -2.8818 9 6 2.0219 5.6874 -2.4015 10 7 2.8204 6.3029 -1.5569 11 14 1.3564 6.5983 -3.8904 12 1 0.0707 7.2521 -3.5368 13 1 1.1341 5.6370 -5.0002 14 1 2.3352 7.6300 -4.3178 15 6 2.0587 -0.7575 -1.1956 16 6 2.4686 -1.9487 -0.8536 17 6 2.2810 -2.1843 0.6271 18 6 2.0678 -0.7745 1.2255 19 1 -0.3633 0.5247 -0.8838 20 1 -0.3634 -1.0275 -0.0126 21 1 -0.3635 0.5030 0.8960 22 1 1.1142 1.9628 -1.6969 23 1 3.3026 3.6183 -1.0283 24 1 1.8920 4.1420 -0.0774 25 1 3.1657 5.8300 -0.7835 26 1 2.0928 -0.3652 -2.2012 27 1 2.8870 -2.6710 -1.5389 28 1 3.1708 -2.6473 1.0537 29 1 1.4052 -2.8085 0.8043 30 1 3.0097 -0.3505 1.5734 31 1 1.3308 -0.7975 2.0283 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694307.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:48 Heat of formation + Delta-G solvation = -39.695291 kcal Electronic energy + Delta-G solvation = -13662.569822 eV Core-core repulsion = 11329.439874 eV Total energy + Delta-G solvation = -2333.129948 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.08023 -37.36467 -34.42393 -32.53208 -31.00814 -28.91013 -26.72437 -25.26286 -22.95631 -21.08993 -19.65581 -18.58930 -17.43116 -16.32706 -15.42064 -15.09621 -14.21357 -13.98300 -13.71576 -13.14205 -12.73734 -12.50836 -12.27709 -12.03869 -11.81528 -11.60085 -11.16840 -11.07788 -10.97479 -10.77637 -10.71621 -10.18135 -9.32375 -8.84817 -8.69290 -8.67599 -7.98397 -6.51753 -4.25132 2.22191 3.33662 3.37065 3.40737 3.56286 4.06651 4.45506 4.56134 4.70700 5.07414 5.20574 5.27291 5.35255 5.43353 5.60316 5.68353 5.70998 5.92710 5.96122 6.15333 6.21633 6.39448 6.47920 6.87007 7.01099 7.22894 7.34230 7.66881 8.27009 8.48354 8.72211 9.00365 9.48928 10.88468 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057447 B = 0.006954 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.286897 B = 4025.711443 C = 4206.997558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C 0.512 3.488 4 O -0.557 6.557 5 N -0.704 5.704 6 C 0.239 3.761 7 C -0.623 4.623 8 H 0.057 0.943 9 C 0.022 3.978 10 N -0.903 5.903 11 Si 1.079 2.921 12 H -0.286 1.286 13 H -0.288 1.288 14 H -0.282 1.282 15 C -0.147 4.147 16 C -0.163 4.163 17 C -0.100 4.100 18 C -0.106 4.106 19 H 0.062 0.938 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.392 0.608 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.273 0.727 26 H 0.128 0.872 27 H 0.126 0.874 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.499 -15.198 0.583 15.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.066 4.066 3 C 0.296 3.704 4 O -0.436 6.436 5 N -0.352 5.352 6 C 0.117 3.883 7 C -0.661 4.661 8 H 0.075 0.925 9 C -0.184 4.184 10 N -0.537 5.537 11 Si 0.906 3.094 12 H -0.213 1.213 13 H -0.214 1.214 14 H -0.208 1.208 15 C -0.166 4.166 16 C -0.181 4.181 17 C -0.137 4.137 18 C -0.144 4.144 19 H 0.081 0.919 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.225 0.775 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.083 0.917 26 H 0.146 0.854 27 H 0.143 0.857 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.944 -13.415 0.440 13.990 hybrid contribution -0.294 -1.596 0.317 1.653 sum -4.238 -15.011 0.757 15.616 Atomic orbital electron populations 1.21722 0.92013 1.02268 1.02725 1.20707 0.96970 0.93331 0.95579 1.20304 0.81156 0.86653 0.82266 1.90619 1.37692 1.78001 1.37310 1.46253 1.49290 1.13945 1.25684 1.19168 0.94493 0.77056 0.97545 1.22091 1.34151 0.99617 1.10234 0.92476 1.25888 0.95009 0.94871 1.02607 1.70730 1.29675 1.40082 1.13246 0.83409 0.76143 0.75579 0.74265 1.21257 1.21374 1.20776 1.23117 0.99635 0.95713 0.98106 1.23261 1.00264 0.97471 0.97126 1.21384 1.01554 0.97611 0.93142 1.22470 1.02753 0.93520 0.95658 0.91864 0.91774 0.91913 0.77479 0.96611 0.96601 0.91677 0.85414 0.85664 0.91125 0.90811 0.89287 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.38 37.16 0.31 -1.36 16 2 C -0.06 -0.96 0.74 -155.76 -0.11 -1.08 16 3 C 0.51 10.66 6.55 -10.98 -0.07 10.59 16 4 O -0.56 -13.79 15.48 5.56 0.09 -13.70 16 5 N -0.70 -15.41 5.41 -61.47 -0.33 -15.75 16 6 C 0.24 6.45 4.74 -5.20 -0.02 6.42 16 7 C -0.62 -17.36 9.28 -34.44 -0.32 -17.67 16 8 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 9 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 10 N -0.90 -27.63 13.65 55.43 0.76 -26.87 16 11 Si 1.08 24.64 29.90 -169.99 -5.08 19.55 16 12 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 C -0.15 -2.03 9.37 -35.70 -0.33 -2.37 16 16 C -0.16 -1.94 10.78 -35.70 -0.38 -2.32 16 17 C -0.10 -1.12 6.81 -26.83 -0.18 -1.30 16 18 C -0.11 -1.50 6.01 -25.02 -0.15 -1.65 16 19 H 0.06 0.80 7.50 -51.92 -0.39 0.41 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.39 7.53 7.65 -40.82 -0.31 7.22 16 23 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 24 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 25 H 0.27 8.47 7.22 -40.82 -0.29 8.18 16 26 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.47 7.00 -51.93 -0.36 1.10 16 31 H 0.07 0.94 7.89 -51.93 -0.41 0.53 16 LS Contribution 263.43 15.07 3.97 3.97 Total: -1.00 -32.43 263.43 -6.30 -38.73 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.33 Total: 4.28 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -1.37 Total: -10.22 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.42 Total: -42.62 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.55 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.43 -6.30 -38.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694307.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.961 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds