Wall clock time and date at job start Sun Mar 29 2020 21:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 110.34417 * 2 1 4 4 O 1.21280 * 120.00014 * 122.28525 * 3 2 1 5 5 N 1.34774 * 119.99902 * 302.27747 * 3 2 1 6 6 C 1.46498 * 120.00067 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.46983 * 180.02562 * 6 5 3 8 8 H 1.07999 * 120.00538 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99661 * 180.02562 * 7 6 5 10 10 N 1.31520 * 120.00186 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00030 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 89.99863 * 11 9 7 13 13 H 1.48503 * 109.47261 * 330.00044 * 11 9 7 14 14 H 1.48500 * 109.47454 * 210.00037 * 11 9 7 15 15 C 1.51095 * 110.48388 * 237.64169 * 2 1 3 16 16 C 1.30535 * 111.10341 * 257.57494 * 15 2 1 17 17 C 1.51103 * 111.10318 * 0.02562 * 16 15 2 18 18 C 1.54632 * 104.72583 * 343.55963 * 17 16 15 19 19 H 1.09009 * 109.46571 * 59.30397 * 1 2 3 20 20 H 1.08996 * 109.47307 * 179.29881 * 1 2 3 21 21 H 1.08997 * 109.47989 * 299.30908 * 1 2 3 22 22 H 0.97003 * 119.99826 * 0.02562 * 5 3 2 23 23 H 1.09002 * 109.46847 * 60.00131 * 6 5 3 24 24 H 1.09000 * 109.46849 * 300.00511 * 6 5 3 25 25 H 0.97001 * 119.99697 * 359.97438 * 10 9 7 26 26 H 1.07998 * 124.45113 * 77.56281 * 15 2 1 27 27 H 1.08000 * 124.44405 * 180.02562 * 16 15 2 28 28 H 1.09001 * 110.38523 * 224.74693 * 17 16 15 29 29 H 1.08999 * 110.38694 * 102.37481 * 17 16 15 30 30 H 1.09001 * 111.03801 * 266.59857 * 18 17 16 31 31 H 1.09000 * 111.03618 * 142.66643 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4130 0.0000 4 8 2.7907 1.7866 0.8879 5 7 1.7038 2.2615 -0.9868 6 6 2.2135 3.6350 -0.9872 7 6 1.6761 4.3699 -2.1880 8 1 1.0208 3.8644 -2.8818 9 6 2.0219 5.6874 -2.4015 10 7 2.8204 6.3029 -1.5569 11 14 1.3564 6.5983 -3.8904 12 1 0.0707 7.2521 -3.5368 13 1 1.1341 5.6370 -5.0002 14 1 2.3352 7.6300 -4.3178 15 6 2.0587 -0.7575 -1.1956 16 6 2.4686 -1.9487 -0.8536 17 6 2.2810 -2.1843 0.6271 18 6 2.0678 -0.7745 1.2255 19 1 -0.3633 0.5247 -0.8838 20 1 -0.3634 -1.0275 -0.0126 21 1 -0.3635 0.5030 0.8960 22 1 1.1142 1.9628 -1.6969 23 1 3.3026 3.6183 -1.0283 24 1 1.8920 4.1420 -0.0774 25 1 3.1657 5.8300 -0.7835 26 1 2.0928 -0.3652 -2.2012 27 1 2.8870 -2.6710 -1.5389 28 1 3.1708 -2.6473 1.0537 29 1 1.4052 -2.8085 0.8043 30 1 3.0097 -0.3505 1.5734 31 1 1.3308 -0.7975 2.0283 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935694307.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:48 Heat of formation + Delta-G solvation = -62.055250 kcal Electronic energy + Delta-G solvation = -13663.539423 eV Core-core repulsion = 11329.439874 eV Total energy + Delta-G solvation = -2334.099548 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.50749 -38.81873 -36.47403 -34.55021 -32.21572 -29.98382 -28.71554 -26.44693 -24.99226 -22.66758 -20.89758 -20.09045 -19.08564 -17.93938 -17.06396 -16.48660 -15.83876 -15.70408 -15.35830 -14.53793 -14.42393 -14.17769 -13.86933 -13.38825 -13.14363 -12.99448 -12.62287 -12.57930 -12.23895 -12.19897 -11.90453 -11.79170 -11.04302 -10.79721 -10.77902 -10.01072 -9.89136 -8.83276 -6.58880 1.20142 1.54055 1.63398 1.69839 1.81152 2.38264 2.57102 3.05174 3.45000 3.60030 3.94162 4.01545 4.28324 4.37081 4.59512 4.71348 4.73920 4.79218 4.90462 4.94160 4.95958 5.14632 5.17485 5.29719 5.42044 5.50870 5.52412 5.90118 6.04142 6.27289 6.74854 7.19510 7.36336 8.55972 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057447 B = 0.006954 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.286897 B = 4025.711443 C = 4206.997558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.054 4.054 3 C 0.505 3.495 4 O -0.604 6.604 5 N -0.699 5.699 6 C 0.252 3.748 7 C -0.630 4.630 8 H 0.076 0.924 9 C -0.033 4.033 10 N -0.929 5.929 11 Si 1.133 2.867 12 H -0.269 1.269 13 H -0.260 1.260 14 H -0.284 1.284 15 C -0.181 4.181 16 C -0.138 4.138 17 C -0.095 4.095 18 C -0.112 4.112 19 H 0.063 0.937 20 H 0.096 0.904 21 H 0.055 0.945 22 H 0.407 0.593 23 H -0.019 1.019 24 H -0.018 1.018 25 H 0.253 0.747 26 H 0.128 0.872 27 H 0.154 0.846 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.056 0.944 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 -17.439 -0.964 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.058 4.058 3 C 0.292 3.708 4 O -0.486 6.486 5 N -0.348 5.348 6 C 0.129 3.871 7 C -0.667 4.667 8 H 0.094 0.906 9 C -0.231 4.231 10 N -0.565 5.565 11 Si 0.952 3.048 12 H -0.195 1.195 13 H -0.184 1.184 14 H -0.210 1.210 15 C -0.199 4.199 16 C -0.156 4.156 17 C -0.132 4.132 18 C -0.150 4.150 19 H 0.082 0.918 20 H 0.115 0.885 21 H 0.074 0.926 22 H 0.243 0.757 23 H -0.001 1.001 24 H 0.000 1.000 25 H 0.062 0.938 26 H 0.146 0.854 27 H 0.172 0.828 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.536 -15.716 -1.107 16.699 hybrid contribution 0.245 -0.974 0.887 1.340 sum -5.291 -16.689 -0.220 17.509 Atomic orbital electron populations 1.21757 0.89903 1.04306 1.02466 1.20770 0.98570 0.89009 0.97410 1.21504 0.79900 0.88700 0.80652 1.90590 1.39698 1.79396 1.38920 1.46048 1.49665 1.12216 1.26892 1.18685 0.92470 0.79799 0.96188 1.22443 1.33948 1.00006 1.10316 0.90605 1.27711 0.94202 0.96427 1.04785 1.70882 1.31655 1.40319 1.13661 0.82753 0.75954 0.74901 0.71161 1.19471 1.18412 1.20974 1.23072 1.02657 0.96684 0.97527 1.23615 0.97208 0.96926 0.97806 1.21439 1.03575 0.95789 0.92353 1.22520 1.01476 0.95266 0.95754 0.91756 0.88526 0.92605 0.75684 1.00135 1.00005 0.93778 0.85390 0.82844 0.89713 0.87820 0.92560 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.38 71.98 0.60 -2.40 16 2 C -0.05 -1.62 0.74 -52.99 -0.04 -1.66 16 3 C 0.50 21.62 6.55 87.66 0.57 22.20 16 4 O -0.60 -31.52 15.48 -3.03 -0.05 -31.56 16 5 N -0.70 -31.38 5.41 -466.80 -2.53 -33.91 16 6 C 0.25 14.26 4.74 85.63 0.41 14.66 16 7 C -0.63 -35.43 9.28 25.60 0.24 -35.19 16 8 H 0.08 3.91 7.60 -2.91 -0.02 3.89 16 9 C -0.03 -1.89 5.46 84.65 0.46 -1.42 16 10 N -0.93 -58.65 13.65 21.45 0.29 -58.35 16 11 Si 1.13 48.54 29.90 68.60 2.05 50.59 16 12 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 13 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 14 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 15 C -0.18 -4.61 9.37 26.25 0.25 -4.37 16 16 C -0.14 -2.76 10.78 26.25 0.28 -2.48 16 17 C -0.09 -1.77 6.81 30.53 0.21 -1.56 16 18 C -0.11 -3.02 6.01 31.70 0.19 -2.83 16 19 H 0.06 1.50 7.50 -2.38 -0.02 1.48 16 20 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.41 15.57 7.65 -92.71 -0.71 14.86 16 23 H -0.02 -1.20 8.01 -2.39 -0.02 -1.22 16 24 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 25 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 26 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 27 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.88 7.00 -2.39 -0.02 1.87 16 31 H 0.09 2.07 7.89 -2.39 -0.02 2.05 16 Total: -1.00 -73.55 263.43 3.44 -70.11 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.50 Total: 18.18 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 3.17 Total: -15.05 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -2.23 Total: -92.26 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.05 Total: -31.56 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.05 Total: 50.59 kcal Total: -73.55 3.44 -70.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694307.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.051 kcal (2) G-P(sol) polarization free energy of solvation -73.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds