Wall clock time and date at job start Sun Mar 29 2020 21:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 110.34494 * 2 1 4 4 O 1.21281 * 119.99523 * 237.71445 * 3 2 1 5 5 N 1.34773 * 119.99914 * 57.70897 * 3 2 1 6 6 C 1.46506 * 119.99778 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.46871 * 179.97438 * 6 5 3 8 8 H 1.07999 * 120.00319 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99717 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 C 1.51108 * 110.48492 * 122.34883 * 2 1 3 16 16 C 1.30519 * 111.10435 * 135.29526 * 15 2 1 17 17 C 1.51103 * 111.10744 * 0.02562 * 16 15 2 18 18 C 1.54633 * 110.38913 * 237.71122 * 2 1 3 19 19 H 1.09002 * 109.46896 * 60.70180 * 1 2 3 20 20 H 1.09001 * 109.46924 * 180.70621 * 1 2 3 21 21 H 1.09002 * 109.47310 * 300.70076 * 1 2 3 22 22 H 0.97000 * 120.00556 * 0.02562 * 5 3 2 23 23 H 1.09005 * 109.46943 * 60.00092 * 6 5 3 24 24 H 1.09002 * 109.47064 * 300.00355 * 6 5 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 26 26 H 1.08002 * 124.44347 * 315.28253 * 15 2 1 27 27 H 1.08005 * 124.44678 * 179.97438 * 16 15 2 28 28 H 1.08993 * 110.38534 * 224.75352 * 17 16 15 29 29 H 1.08998 * 110.48575 * 102.41792 * 17 16 15 30 30 H 1.09003 * 111.03679 * 334.47022 * 18 2 1 31 31 H 1.08997 * 111.03689 * 98.40812 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4131 0.0000 4 8 2.7908 1.7865 -0.8880 5 7 1.7036 2.2616 0.9867 6 6 2.2134 3.6351 0.9869 7 6 1.6758 4.3702 2.1876 8 1 1.0203 3.8648 2.8813 9 6 2.0208 5.6881 2.4004 10 7 1.5520 6.3295 3.4485 11 14 3.1540 6.5625 1.2001 12 1 4.5640 6.3830 1.6301 13 1 2.9738 5.9893 -0.1579 14 1 2.8249 8.0104 1.1740 15 6 2.0588 -0.7574 1.1958 16 6 3.0340 -1.5545 0.8536 17 6 3.3186 -1.4613 -0.6275 18 6 2.0687 -0.7743 -1.2253 19 1 -0.3633 0.5029 -0.8962 20 1 -0.3633 -1.0276 0.0127 21 1 -0.3634 0.5247 0.8836 22 1 1.1145 1.9629 1.6970 23 1 1.8921 4.1421 0.0770 24 1 3.3025 3.6184 1.0283 25 1 1.7950 7.2565 3.5985 26 1 1.6797 -0.6527 2.2017 27 1 3.5679 -2.1959 1.5391 28 1 3.4444 -2.4567 -1.0533 29 1 4.2075 -0.8568 -0.8077 30 1 1.3445 -1.5117 -1.5715 31 1 2.3445 -0.0917 -2.0291 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694308.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:49 Heat of formation + Delta-G solvation = -31.676592 kcal Electronic energy + Delta-G solvation = -13738.423915 eV Core-core repulsion = 11405.641685 eV Total energy + Delta-G solvation = -2332.782231 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.12740 -37.18786 -34.30595 -32.44706 -31.30942 -28.90915 -27.75346 -24.87292 -22.79324 -20.99340 -19.66864 -18.66837 -17.09512 -16.29157 -15.54608 -14.98249 -14.43936 -14.27718 -13.73948 -13.02449 -12.97028 -12.41058 -12.25214 -12.01242 -11.80662 -11.72151 -11.18343 -10.97039 -10.92403 -10.73261 -10.62795 -9.96645 -9.55586 -9.46929 -8.77099 -8.61816 -8.11295 -6.21175 -4.23157 2.26209 3.26209 3.30871 3.33519 3.42260 4.05998 4.33904 4.60429 4.73781 5.08746 5.14249 5.21485 5.41308 5.52156 5.60292 5.78583 5.78893 5.94251 6.01500 6.14837 6.24516 6.41831 6.51812 6.83034 6.92627 7.08511 7.25743 7.41176 8.15302 8.54545 8.76000 8.96768 9.39318 10.90823 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.049357 B = 0.007850 C = 0.007496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.154157 B = 3566.186109 C = 3734.235744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C 0.517 3.483 4 O -0.557 6.557 5 N -0.701 5.701 6 C 0.220 3.780 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.077 3.923 10 N -0.893 5.893 11 Si 0.877 3.123 12 H -0.273 1.273 13 H -0.261 1.261 14 H -0.283 1.283 15 C -0.154 4.154 16 C -0.158 4.158 17 C -0.101 4.101 18 C -0.107 4.107 19 H 0.061 0.939 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.396 0.604 23 H 0.025 0.975 24 H 0.019 0.981 25 H 0.267 0.733 26 H 0.129 0.871 27 H 0.125 0.875 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -14.511 -5.597 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.066 4.066 3 C 0.301 3.699 4 O -0.437 6.437 5 N -0.349 5.349 6 C 0.098 3.902 7 C -0.581 4.581 8 H 0.097 0.903 9 C -0.126 4.126 10 N -0.530 5.530 11 Si 0.703 3.297 12 H -0.199 1.199 13 H -0.185 1.185 14 H -0.209 1.209 15 C -0.172 4.172 16 C -0.176 4.176 17 C -0.138 4.138 18 C -0.144 4.144 19 H 0.080 0.920 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.230 0.770 23 H 0.043 0.957 24 H 0.037 0.963 25 H 0.077 0.923 26 H 0.147 0.853 27 H 0.143 0.857 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.051 -14.008 -6.125 15.289 hybrid contribution 0.311 0.498 0.073 0.592 sum 0.363 -13.510 -6.052 14.808 Atomic orbital electron populations 1.21778 0.92359 1.02289 1.02775 1.20674 0.97014 0.93298 0.95565 1.20202 0.81074 0.86412 0.82167 1.90609 1.37719 1.77995 1.37354 1.46146 1.49359 1.13550 1.25819 1.19492 0.94651 0.78169 0.97935 1.21100 1.31525 0.97032 1.08423 0.90269 1.24798 0.95596 0.97000 0.95225 1.69884 1.44305 1.11346 1.27468 0.86818 0.81388 0.79013 0.82484 1.19864 1.18520 1.20871 1.23096 0.98739 0.97355 0.97983 1.23325 0.97593 0.99398 0.97316 1.21374 0.99149 1.00414 0.92856 1.22447 0.96565 0.98526 0.96895 0.92011 0.91737 0.91789 0.77042 0.95746 0.96263 0.92275 0.85291 0.85699 0.91352 0.90337 0.90876 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.39 37.16 0.31 -1.36 16 2 C -0.06 -0.92 0.74 -155.75 -0.12 -1.04 16 3 C 0.52 10.26 6.54 -10.98 -0.07 10.19 16 4 O -0.56 -12.99 15.46 5.56 0.09 -12.91 16 5 N -0.70 -14.73 5.41 -61.47 -0.33 -15.06 16 6 C 0.22 5.54 4.50 -5.19 -0.02 5.51 16 7 C -0.54 -15.11 9.83 -34.44 -0.34 -15.45 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 10 N -0.89 -26.69 13.96 55.43 0.77 -25.92 16 11 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 12 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C -0.15 -2.05 9.37 -35.69 -0.33 -2.39 16 16 C -0.16 -1.97 10.77 -35.69 -0.38 -2.35 16 17 C -0.10 -1.27 6.81 -26.82 -0.18 -1.45 16 18 C -0.11 -1.44 6.03 -25.00 -0.15 -1.59 16 19 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.06 0.78 7.50 -51.93 -0.39 0.39 16 22 H 0.40 7.42 7.65 -40.82 -0.31 7.10 16 23 H 0.02 0.65 7.20 -51.93 -0.37 0.28 16 24 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 31 H 0.09 1.38 6.94 -51.93 -0.36 1.02 16 LS Contribution 261.11 15.07 3.93 3.93 Total: -1.00 -31.70 261.11 -5.95 -37.65 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -4.36 Total: 3.08 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.39 Total: -7.81 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.44 Total: -40.98 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.70 -5.95 -37.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694308.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.972 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds