Wall clock time and date at job start Sun Mar 29 2020 21:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50707 * 110.34494 * 2 1 4 4 O 1.21281 * 119.99523 * 237.71445 * 3 2 1 5 5 N 1.34773 * 119.99914 * 57.70897 * 3 2 1 6 6 C 1.46506 * 119.99778 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.46871 * 179.97438 * 6 5 3 8 8 H 1.07999 * 120.00319 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99717 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 C 1.51108 * 110.48492 * 122.34883 * 2 1 3 16 16 C 1.30519 * 111.10435 * 135.29526 * 15 2 1 17 17 C 1.51103 * 111.10744 * 0.02562 * 16 15 2 18 18 C 1.54633 * 110.38913 * 237.71122 * 2 1 3 19 19 H 1.09002 * 109.46896 * 60.70180 * 1 2 3 20 20 H 1.09001 * 109.46924 * 180.70621 * 1 2 3 21 21 H 1.09002 * 109.47310 * 300.70076 * 1 2 3 22 22 H 0.97000 * 120.00556 * 0.02562 * 5 3 2 23 23 H 1.09005 * 109.46943 * 60.00092 * 6 5 3 24 24 H 1.09002 * 109.47064 * 300.00355 * 6 5 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 26 26 H 1.08002 * 124.44347 * 315.28253 * 15 2 1 27 27 H 1.08005 * 124.44678 * 179.97438 * 16 15 2 28 28 H 1.08993 * 110.38534 * 224.75352 * 17 16 15 29 29 H 1.08998 * 110.48575 * 102.41792 * 17 16 15 30 30 H 1.09003 * 111.03679 * 334.47022 * 18 2 1 31 31 H 1.08997 * 111.03689 * 98.40812 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0539 1.4131 0.0000 4 8 2.7908 1.7865 -0.8880 5 7 1.7036 2.2616 0.9867 6 6 2.2134 3.6351 0.9869 7 6 1.6758 4.3702 2.1876 8 1 1.0203 3.8648 2.8813 9 6 2.0208 5.6881 2.4004 10 7 1.5520 6.3295 3.4485 11 14 3.1540 6.5625 1.2001 12 1 4.5640 6.3830 1.6301 13 1 2.9738 5.9893 -0.1579 14 1 2.8249 8.0104 1.1740 15 6 2.0588 -0.7574 1.1958 16 6 3.0340 -1.5545 0.8536 17 6 3.3186 -1.4613 -0.6275 18 6 2.0687 -0.7743 -1.2253 19 1 -0.3633 0.5029 -0.8962 20 1 -0.3633 -1.0276 0.0127 21 1 -0.3634 0.5247 0.8836 22 1 1.1145 1.9629 1.6970 23 1 1.8921 4.1421 0.0770 24 1 3.3025 3.6184 1.0283 25 1 1.7950 7.2565 3.5985 26 1 1.6797 -0.6527 2.2017 27 1 3.5679 -2.1959 1.5391 28 1 3.4444 -2.4567 -1.0533 29 1 4.2075 -0.8568 -0.8077 30 1 1.3445 -1.5117 -1.5715 31 1 2.3445 -0.0917 -2.0291 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935694308.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:49 Heat of formation + Delta-G solvation = -53.293037 kcal Electronic energy + Delta-G solvation = -13739.361275 eV Core-core repulsion = 11405.641685 eV Total energy + Delta-G solvation = -2333.719590 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.49101 -38.57399 -36.19815 -34.48099 -32.50870 -30.13892 -29.50832 -26.00570 -24.55734 -22.63163 -20.95164 -20.06364 -18.74485 -17.91224 -17.06210 -16.56572 -16.12404 -15.81326 -15.27924 -14.68045 -14.29701 -14.15510 -13.88845 -13.22485 -13.10975 -12.83781 -12.74570 -12.69756 -12.11140 -12.04247 -11.96247 -11.73080 -11.62465 -10.96621 -10.93408 -9.96528 -9.80006 -8.42456 -6.49545 1.21961 1.30232 1.32297 1.45037 1.76672 2.25685 2.50290 2.92609 3.54155 3.68369 3.91010 4.12208 4.33041 4.49576 4.59382 4.73190 4.81416 4.83988 4.94888 4.98927 5.02938 5.14652 5.21634 5.24496 5.38676 5.50581 5.54545 5.95387 6.06405 6.50925 6.81916 7.12997 7.37690 8.72291 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.049357 B = 0.007850 C = 0.007496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.154157 B = 3566.186109 C = 3734.235744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C 0.512 3.488 4 O -0.596 6.596 5 N -0.702 5.702 6 C 0.232 3.768 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.028 3.972 10 N -0.929 5.929 11 Si 0.937 3.063 12 H -0.265 1.265 13 H -0.263 1.263 14 H -0.270 1.270 15 C -0.172 4.172 16 C -0.147 4.147 17 C -0.105 4.105 18 C -0.108 4.108 19 H 0.055 0.945 20 H 0.094 0.906 21 H 0.062 0.938 22 H 0.407 0.593 23 H 0.011 0.989 24 H 0.008 0.992 25 H 0.273 0.727 26 H 0.142 0.858 27 H 0.151 0.849 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 -16.132 -6.035 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.061 4.061 3 C 0.300 3.700 4 O -0.478 6.478 5 N -0.350 5.350 6 C 0.108 3.892 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.173 4.173 10 N -0.568 5.568 11 Si 0.760 3.240 12 H -0.190 1.190 13 H -0.187 1.187 14 H -0.195 1.195 15 C -0.190 4.190 16 C -0.165 4.165 17 C -0.142 4.142 18 C -0.145 4.145 19 H 0.074 0.926 20 H 0.113 0.887 21 H 0.081 0.919 22 H 0.242 0.758 23 H 0.029 0.971 24 H 0.026 0.974 25 H 0.082 0.918 26 H 0.159 0.841 27 H 0.168 0.832 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.180 -15.655 -6.551 16.972 hybrid contribution 0.253 0.944 0.218 1.001 sum 0.433 -14.711 -6.333 16.022 Atomic orbital electron populations 1.21809 0.90464 1.04186 1.02497 1.20724 0.98481 0.89656 0.97261 1.21209 0.79979 0.88166 0.80674 1.90584 1.39382 1.79197 1.38613 1.46027 1.49785 1.12286 1.26929 1.19094 0.93816 0.80255 0.96039 1.21278 1.31067 0.97391 1.08805 0.92236 1.25589 0.97029 0.97854 0.96789 1.69978 1.45697 1.12030 1.29100 0.85872 0.79704 0.78364 0.80047 1.18996 1.18700 1.19510 1.23190 0.99882 0.97965 0.97978 1.23626 0.96613 0.98820 0.97416 1.21429 0.97809 1.01529 0.93388 1.22501 0.97799 0.98615 0.95623 0.92577 0.88721 0.91859 0.75764 0.97078 0.97399 0.91773 0.84051 0.83186 0.88388 0.92363 0.87825 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.39 71.98 0.60 -2.39 16 2 C -0.06 -1.63 0.74 -52.99 -0.04 -1.66 16 3 C 0.51 20.21 6.54 87.66 0.57 20.78 16 4 O -0.60 -28.10 15.46 -3.03 -0.05 -28.14 16 5 N -0.70 -29.51 5.41 -466.77 -2.53 -32.03 16 6 C 0.23 11.78 4.50 85.63 0.38 12.17 16 7 C -0.55 -30.85 9.83 25.60 0.25 -30.60 16 8 H 0.06 3.51 7.84 -2.91 -0.02 3.48 16 9 C 0.03 1.60 5.47 84.66 0.46 2.06 16 10 N -0.93 -55.91 13.96 21.45 0.30 -55.61 16 11 Si 0.94 44.77 27.47 68.60 1.88 46.65 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.26 -12.54 6.54 99.48 0.65 -11.89 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 C -0.17 -4.18 9.37 26.27 0.25 -3.93 16 16 C -0.15 -3.21 10.77 26.27 0.28 -2.92 16 17 C -0.10 -2.39 6.81 30.54 0.21 -2.18 16 18 C -0.11 -2.70 6.03 31.71 0.19 -2.51 16 19 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 20 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.06 1.43 7.50 -2.39 -0.02 1.42 16 22 H 0.41 15.18 7.65 -92.71 -0.71 14.47 16 23 H 0.01 0.60 7.20 -2.38 -0.02 0.59 16 24 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 27 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 1.95 7.91 -2.39 -0.02 1.93 16 31 H 0.06 1.97 6.94 -2.39 -0.02 1.95 16 Total: -1.00 -68.17 261.11 3.12 -65.04 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.35 Total: 15.29 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 3.17 Total: -11.19 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -2.23 Total: -87.65 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.05 Total: -28.14 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -68.17 3.12 -65.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694308.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.748 kcal (2) G-P(sol) polarization free energy of solvation -68.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds