Wall clock time and date at job start Sun Mar 29 2020 21:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 110.94375 * 2 1 4 4 O 1.21289 * 120.00010 * 236.00710 * 3 2 1 5 5 N 1.34771 * 120.00391 * 56.01051 * 3 2 1 6 6 C 1.46497 * 120.00474 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47292 * 179.97438 * 6 5 3 8 8 H 1.08000 * 120.00158 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00017 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99906 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00060 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47124 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46961 * 120.00663 * 11 9 7 14 14 H 1.48500 * 109.47286 * 240.00482 * 11 9 7 15 15 C 1.54637 * 111.03763 * 236.00936 * 2 1 3 16 16 C 1.51104 * 104.82203 * 217.39290 * 15 2 1 17 17 C 1.30524 * 111.10723 * 16.38048 * 16 15 2 18 18 C 1.51101 * 111.10394 * 359.97438 * 17 16 15 19 19 H 1.09004 * 109.46953 * 183.98837 * 1 2 3 20 20 H 1.08997 * 109.47177 * 303.99280 * 1 2 3 21 21 H 1.09002 * 109.46636 * 63.99039 * 1 2 3 22 22 H 0.97001 * 119.99764 * 359.97438 * 5 3 2 23 23 H 1.08994 * 109.47222 * 300.00147 * 6 5 3 24 24 H 1.09006 * 109.46822 * 60.00092 * 6 5 3 25 25 H 0.96997 * 119.99741 * 180.02562 * 10 9 7 26 26 H 1.09002 * 110.38719 * 98.52368 * 15 2 1 27 27 H 1.09000 * 110.38599 * 336.25788 * 15 2 1 28 28 H 1.08003 * 124.44176 * 196.36011 * 16 15 2 29 29 H 1.08000 * 124.44551 * 179.97438 * 17 16 15 30 30 H 1.08998 * 110.38623 * 102.37474 * 18 17 16 31 31 H 1.08992 * 110.38694 * 224.63451 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0687 1.4074 0.0000 4 8 2.8339 1.7638 -0.8709 5 7 1.7002 2.2700 0.9677 6 6 2.2243 3.6380 0.9680 7 6 1.6615 4.3914 2.1457 8 1 0.9817 3.9001 2.8261 9 6 2.0152 5.7074 2.3550 10 7 2.8434 6.3055 1.5267 11 14 1.3170 6.6414 3.8143 12 1 0.4156 5.7498 4.5874 13 1 2.4282 7.0985 4.6871 14 1 0.5526 7.8184 3.3290 15 6 2.0851 -0.8069 -1.1967 16 6 3.3071 -1.5112 -0.6545 17 6 3.3088 -1.5119 0.6508 18 6 2.0885 -0.8076 1.1968 19 1 -0.3633 -1.0252 0.0715 20 1 -0.3633 0.5745 0.8520 21 1 -0.3633 0.4507 -0.9236 22 1 1.0880 1.9851 1.6640 23 1 3.3115 3.6106 1.0398 24 1 1.9337 4.1387 0.0444 25 1 3.0925 7.2313 1.6742 26 1 2.3628 -0.1368 -2.0104 27 1 1.3485 -1.5338 -1.5389 28 1 4.0777 -1.9559 -1.2666 29 1 4.0810 -1.9573 1.2604 30 1 1.3516 -1.5345 1.5383 31 1 2.3682 -0.1401 2.0117 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:51 Heat of formation + Delta-G solvation = -35.303459 kcal Electronic energy + Delta-G solvation = -13696.792867 eV Core-core repulsion = 11363.853363 eV Total energy + Delta-G solvation = -2332.939504 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.98018 -37.05134 -34.17142 -32.47608 -31.39808 -28.10283 -27.12346 -25.40037 -23.23160 -21.21455 -18.85579 -18.72021 -16.95760 -15.91196 -15.45199 -15.05541 -14.42266 -14.17062 -13.48107 -12.92104 -12.57935 -12.51276 -12.08818 -11.98412 -11.81841 -11.67927 -11.07145 -11.00428 -10.93333 -10.86711 -10.47311 -10.29720 -9.36294 -8.99784 -8.73087 -8.65921 -7.83456 -6.15721 -4.22489 2.43692 3.23801 3.30808 3.33963 3.41701 4.10115 4.38022 4.62855 4.81326 5.10109 5.20411 5.37361 5.46836 5.54806 5.74241 5.81848 5.86964 5.92318 6.08457 6.16661 6.26560 6.34066 6.68253 7.05097 7.33971 7.48736 7.54214 7.69097 7.98760 8.67357 8.80666 9.15601 9.44488 10.94596 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053293 B = 0.007127 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.275623 B = 3927.546145 C = 4040.969969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 C 0.514 3.486 4 O -0.553 6.553 5 N -0.710 5.710 6 C 0.249 3.751 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.063 3.937 10 N -0.886 5.886 11 Si 0.903 3.097 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.282 1.282 15 C -0.084 4.084 16 C -0.154 4.154 17 C -0.176 4.176 18 C -0.086 4.086 19 H 0.063 0.937 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.389 0.611 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.265 0.735 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.010 -14.093 -0.509 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.094 4.094 3 C 0.298 3.702 4 O -0.432 6.432 5 N -0.358 5.358 6 C 0.129 3.871 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.141 4.141 10 N -0.523 5.523 11 Si 0.731 3.269 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.121 4.121 16 C -0.172 4.172 17 C -0.194 4.194 18 C -0.124 4.124 19 H 0.082 0.918 20 H 0.082 0.918 21 H 0.081 0.919 22 H 0.222 0.778 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.099 0.901 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.371 -13.604 -1.158 14.063 hybrid contribution -0.466 0.504 1.138 1.328 sum -3.837 -13.101 -0.020 13.651 Atomic orbital electron populations 1.21750 0.92276 1.02156 1.02845 1.21689 0.96645 0.93728 0.97387 1.20074 0.81582 0.86255 0.82267 1.90628 1.36314 1.78491 1.37751 1.46412 1.47546 1.14461 1.27398 1.19098 0.94903 0.75697 0.97442 1.21272 1.28991 0.96965 1.10804 0.91874 1.24960 0.94903 0.97381 0.96813 1.69991 1.33288 1.12494 1.36541 0.86366 0.78843 0.79743 0.81990 1.19633 1.20800 1.20786 1.21328 0.95200 0.97629 0.97977 1.23214 0.98258 0.99527 0.96180 1.23180 0.98552 1.01318 0.96301 1.21446 0.95859 0.97954 0.97109 0.91831 0.91768 0.91930 0.77783 0.95630 0.95600 0.92521 0.89418 0.90548 0.86046 0.86004 0.90075 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.43 37.16 0.31 -1.33 16 2 C -0.09 -1.39 0.85 -153.85 -0.13 -1.52 16 3 C 0.51 10.68 6.52 -10.99 -0.07 10.61 16 4 O -0.55 -13.80 15.53 5.55 0.09 -13.71 16 5 N -0.71 -15.38 5.38 -61.48 -0.33 -15.71 16 6 C 0.25 6.74 5.43 -5.19 -0.03 6.72 16 7 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 11 Si 0.90 20.98 29.54 -169.99 -5.02 15.95 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 15 C -0.08 -1.21 5.72 -26.82 -0.15 -1.36 16 16 C -0.15 -2.11 10.78 -35.70 -0.38 -2.49 16 17 C -0.18 -2.36 10.78 -35.70 -0.38 -2.74 16 18 C -0.09 -1.16 5.93 -26.74 -0.16 -1.32 16 19 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 20 H 0.06 0.77 7.37 -51.93 -0.38 0.39 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.39 7.30 7.55 -40.82 -0.31 6.99 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.09 1.45 7.01 -51.93 -0.36 1.08 16 27 H 0.08 0.89 7.89 -51.93 -0.41 0.48 16 28 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 29 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.08 0.89 7.83 -51.93 -0.41 0.48 16 31 H 0.08 1.09 7.86 -51.93 -0.41 0.68 16 LS Contribution 264.21 15.07 3.98 3.98 Total: -1.00 -32.03 264.21 -6.31 -38.34 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.34 Total: 3.75 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.42 Total: -6.97 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.41 Total: -41.34 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.09 Total: -13.71 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.03 -6.31 -38.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.034 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds