Wall clock time and date at job start Sun Mar 29 2020 21:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 110.94375 * 2 1 4 4 O 1.21289 * 120.00010 * 236.00710 * 3 2 1 5 5 N 1.34771 * 120.00391 * 56.01051 * 3 2 1 6 6 C 1.46497 * 120.00474 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47292 * 179.97438 * 6 5 3 8 8 H 1.08000 * 120.00158 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00017 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99906 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00060 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47124 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46961 * 120.00663 * 11 9 7 14 14 H 1.48500 * 109.47286 * 240.00482 * 11 9 7 15 15 C 1.54637 * 111.03763 * 236.00936 * 2 1 3 16 16 C 1.51104 * 104.82203 * 217.39290 * 15 2 1 17 17 C 1.30524 * 111.10723 * 16.38048 * 16 15 2 18 18 C 1.51101 * 111.10394 * 359.97438 * 17 16 15 19 19 H 1.09004 * 109.46953 * 183.98837 * 1 2 3 20 20 H 1.08997 * 109.47177 * 303.99280 * 1 2 3 21 21 H 1.09002 * 109.46636 * 63.99039 * 1 2 3 22 22 H 0.97001 * 119.99764 * 359.97438 * 5 3 2 23 23 H 1.08994 * 109.47222 * 300.00147 * 6 5 3 24 24 H 1.09006 * 109.46822 * 60.00092 * 6 5 3 25 25 H 0.96997 * 119.99741 * 180.02562 * 10 9 7 26 26 H 1.09002 * 110.38719 * 98.52368 * 15 2 1 27 27 H 1.09000 * 110.38599 * 336.25788 * 15 2 1 28 28 H 1.08003 * 124.44176 * 196.36011 * 16 15 2 29 29 H 1.08000 * 124.44551 * 179.97438 * 17 16 15 30 30 H 1.08998 * 110.38623 * 102.37474 * 18 17 16 31 31 H 1.08992 * 110.38694 * 224.63451 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0687 1.4074 0.0000 4 8 2.8339 1.7638 -0.8709 5 7 1.7002 2.2700 0.9677 6 6 2.2243 3.6380 0.9680 7 6 1.6615 4.3914 2.1457 8 1 0.9817 3.9001 2.8261 9 6 2.0152 5.7074 2.3550 10 7 2.8434 6.3055 1.5267 11 14 1.3170 6.6414 3.8143 12 1 0.4156 5.7498 4.5874 13 1 2.4282 7.0985 4.6871 14 1 0.5526 7.8184 3.3290 15 6 2.0851 -0.8069 -1.1967 16 6 3.3071 -1.5112 -0.6545 17 6 3.3088 -1.5119 0.6508 18 6 2.0885 -0.8076 1.1968 19 1 -0.3633 -1.0252 0.0715 20 1 -0.3633 0.5745 0.8520 21 1 -0.3633 0.4507 -0.9236 22 1 1.0880 1.9851 1.6640 23 1 3.3115 3.6106 1.0398 24 1 1.9337 4.1387 0.0444 25 1 3.0925 7.2313 1.6742 26 1 2.3628 -0.1368 -2.0104 27 1 1.3485 -1.5338 -1.5389 28 1 4.0777 -1.9559 -1.2666 29 1 4.0810 -1.9573 1.2604 30 1 1.3516 -1.5345 1.5383 31 1 2.3682 -0.1401 2.0117 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935694690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:50 Heat of formation + Delta-G solvation = -57.308767 kcal Electronic energy + Delta-G solvation = -13697.747088 eV Core-core repulsion = 11363.853363 eV Total energy + Delta-G solvation = -2333.893725 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.42511 -38.53018 -36.17028 -34.44486 -32.65353 -29.47876 -28.88953 -26.47665 -25.15361 -22.91210 -20.54808 -19.77699 -18.61239 -17.65948 -17.04639 -16.63005 -16.17160 -15.83573 -15.08839 -14.20076 -14.12677 -13.88850 -13.61713 -13.59789 -13.09696 -13.03320 -12.85645 -12.76188 -12.22436 -12.16007 -12.05013 -11.61044 -11.45468 -10.83110 -10.66470 -9.88194 -9.73213 -8.30697 -6.47786 1.40125 1.42425 1.43805 1.57430 1.75939 2.31098 2.56950 3.04145 3.49170 3.68578 3.87469 4.16310 4.36276 4.50837 4.72956 4.79421 4.85021 4.96269 4.96872 5.08645 5.11659 5.17034 5.21149 5.31972 5.47999 5.63360 5.69452 5.83292 6.01679 6.63552 6.90224 7.21790 7.48251 8.81928 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053293 B = 0.007127 C = 0.006927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.275623 B = 3927.546145 C = 4040.969969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C 0.507 3.493 4 O -0.602 6.602 5 N -0.704 5.704 6 C 0.267 3.733 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.003 3.997 10 N -0.932 5.932 11 Si 0.986 3.014 12 H -0.252 1.252 13 H -0.279 1.279 14 H -0.278 1.278 15 C -0.085 4.085 16 C -0.170 4.170 17 C -0.181 4.181 18 C -0.084 4.084 19 H 0.101 0.899 20 H 0.067 0.933 21 H 0.054 0.946 22 H 0.407 0.593 23 H -0.016 1.016 24 H -0.014 1.014 25 H 0.269 0.731 26 H 0.057 0.943 27 H 0.110 0.890 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.119 0.881 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -15.715 1.354 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C 0.294 3.706 4 O -0.484 6.484 5 N -0.353 5.353 6 C 0.144 3.856 7 C -0.593 4.593 8 H 0.102 0.898 9 C -0.197 4.197 10 N -0.571 5.571 11 Si 0.809 3.191 12 H -0.175 1.175 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.122 4.122 16 C -0.188 4.188 17 C -0.199 4.199 18 C -0.121 4.121 19 H 0.120 0.880 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.242 0.758 23 H 0.002 0.998 24 H 0.004 0.996 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.137 0.863 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.176 -15.274 0.720 16.143 hybrid contribution 0.139 0.987 0.482 1.107 sum -5.037 -14.286 1.202 15.196 Atomic orbital electron populations 1.21802 0.89583 1.04642 1.02721 1.21727 0.98592 0.89473 0.99122 1.21237 0.80353 0.88322 0.80647 1.90601 1.38466 1.79920 1.39456 1.46157 1.47893 1.12706 1.28540 1.18533 0.92588 0.78485 0.96022 1.21646 1.29282 0.97475 1.10914 0.89752 1.26102 0.94940 0.98532 1.00100 1.70154 1.34861 1.13105 1.38945 0.85086 0.78214 0.78111 0.77656 1.17501 1.20423 1.20367 1.21385 0.96554 0.97647 0.96647 1.23410 0.98596 1.00045 0.96724 1.23452 0.98977 1.01036 0.96444 1.21521 0.96819 0.98141 0.95641 0.88040 0.91388 0.92646 0.75750 0.99819 0.99635 0.92229 0.92453 0.87233 0.84750 0.84261 0.86316 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.43 71.98 0.61 -2.22 16 2 C -0.09 -2.48 0.85 -51.76 -0.04 -2.52 16 3 C 0.51 21.46 6.52 87.66 0.57 22.03 16 4 O -0.60 -31.58 15.53 -3.06 -0.05 -31.62 16 5 N -0.70 -30.99 5.38 -466.80 -2.51 -33.50 16 6 C 0.27 15.09 5.43 85.63 0.46 15.55 16 7 C -0.56 -30.71 9.28 25.60 0.24 -30.47 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.00 0.15 5.46 84.65 0.46 0.61 16 10 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 11 Si 0.99 42.57 29.54 68.60 2.03 44.59 16 12 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 14 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 15 C -0.09 -2.32 5.72 30.53 0.17 -2.15 16 16 C -0.17 -4.39 10.78 26.27 0.28 -4.11 16 17 C -0.18 -4.46 10.78 26.26 0.28 -4.17 16 18 C -0.08 -2.02 5.93 30.59 0.18 -1.84 16 19 H 0.10 1.49 8.05 -2.38 -0.02 1.47 16 20 H 0.07 1.43 7.37 -2.39 -0.02 1.41 16 21 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.41 14.90 7.55 -92.71 -0.70 14.20 16 23 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 24 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 25 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 26 H 0.06 1.93 7.01 -2.39 -0.02 1.91 16 27 H 0.11 2.22 7.89 -2.39 -0.02 2.21 16 28 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 29 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.12 2.01 7.83 -2.39 -0.02 1.99 16 31 H 0.06 1.73 7.86 -2.39 -0.02 1.71 16 Total: -1.00 -72.64 264.21 3.39 -69.25 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.41 Total: 17.29 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 3.22 Total: -9.28 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -2.23 Total: -90.23 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.05 Total: -31.62 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -72.64 3.39 -69.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.942 kcal (2) G-P(sol) polarization free energy of solvation -72.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds