Wall clock time and date at job start Sun Mar 29 2020 21:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35046 * 126.39446 * 2 1 4 4 N 1.30499 * 108.69457 * 180.02562 * 3 2 1 5 5 C 1.34128 * 109.26095 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.99126 * 180.26420 * 5 4 3 7 7 N 1.46498 * 109.47161 * 274.68730 * 6 5 4 8 8 C 1.34774 * 119.99782 * 180.02562 * 7 6 5 9 9 O 1.21686 * 120.00439 * 0.02562 * 8 7 6 10 10 C 1.46383 * 119.99848 * 180.02562 * 8 7 6 11 11 H 1.07995 * 119.99920 * 359.97438 * 10 8 7 12 12 C 1.40052 * 119.99914 * 180.02562 * 10 8 7 13 13 N 1.30670 * 119.99807 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 119.99954 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47142 * 59.99621 * 14 12 10 16 16 H 1.48494 * 109.47106 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46911 * 299.99738 * 14 12 10 18 18 C 1.34675 * 108.01655 * 0.02562 * 5 4 3 19 19 H 1.09006 * 109.46843 * 270.00040 * 1 2 3 20 20 H 1.09001 * 109.46928 * 29.99320 * 1 2 3 21 21 H 1.08996 * 109.47351 * 149.99542 * 1 2 3 22 22 H 1.08000 * 125.65569 * 359.97438 * 3 2 1 23 23 H 1.09003 * 109.47361 * 34.69044 * 6 5 4 24 24 H 1.08999 * 109.46998 * 154.68800 * 6 5 4 25 25 H 0.97000 * 120.00524 * 0.02562 * 7 6 5 26 26 H 0.97006 * 119.99825 * 180.02562 * 13 12 10 27 27 H 1.07999 * 126.58816 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5461 -0.6505 -0.0015 6 6 4.7890 -1.5025 0.0033 7 7 5.2617 -1.6844 -1.3714 8 6 6.3667 -2.4172 -1.6126 9 8 6.9717 -2.9282 -0.6886 10 6 6.8393 -2.5985 -2.9861 11 1 6.3023 -2.1454 -3.8062 12 6 7.9874 -3.3605 -3.2368 13 7 8.6369 -3.9092 -2.2446 14 14 8.5901 -3.5924 -4.9896 15 1 8.9011 -2.2682 -5.5854 16 1 9.8145 -4.4326 -4.9850 17 1 7.5339 -4.2604 -5.7918 18 6 2.2772 -1.1018 -0.0021 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 0.8901 -0.5137 21 1 -0.3634 -0.8899 -0.5139 22 1 1.9335 2.1145 -0.0004 23 1 5.5639 -1.0115 0.5920 24 1 4.5615 -2.4746 0.4409 25 1 4.7793 -1.2775 -2.1080 26 1 9.4323 -4.4366 -2.4182 27 1 1.9612 -2.1345 -0.0033 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953058691.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:18 Heat of formation + Delta-G solvation = 23.668180 kcal Electronic energy + Delta-G solvation = -12965.052319 eV Core-core repulsion = 10531.129675 eV Total energy + Delta-G solvation = -2433.922645 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.89903 -37.09573 -34.36910 -32.90295 -32.10032 -29.60513 -27.63409 -26.29938 -24.40157 -21.09446 -20.15389 -19.44242 -17.41629 -16.60334 -15.67183 -15.19709 -14.47140 -14.24054 -13.95975 -13.83242 -12.92633 -12.87447 -12.85263 -12.33732 -11.65845 -11.27423 -11.08021 -10.79366 -10.35538 -10.17456 -9.72599 -9.48118 -8.75330 -8.34907 -7.46197 -7.33170 -6.08201 -4.53160 2.14299 2.82628 3.22482 3.25022 3.27251 3.31211 4.20473 4.53872 4.68851 4.73391 4.89221 4.96504 5.13355 5.30939 5.52737 5.71138 5.95103 6.26946 6.52723 6.61473 6.93677 7.28599 7.52996 8.06666 8.23704 8.28595 8.45426 9.12284 9.68344 10.71042 10.90394 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.062985 B = 0.006206 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.442688 B = 4511.024425 C = 4697.460432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.469 5.469 3 C 0.173 3.827 4 N -0.480 5.480 5 C 0.004 3.996 6 C 0.215 3.785 7 N -0.760 5.760 8 C 0.556 3.444 9 O -0.582 6.582 10 C -0.545 4.545 11 H 0.066 0.934 12 C 0.087 3.913 13 N -0.770 5.770 14 Si 0.908 3.092 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.269 1.269 18 C -0.046 4.046 19 H 0.074 0.926 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.202 0.798 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.380 0.620 26 H 0.268 0.732 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.379 6.624 1.774 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.154 5.154 3 C -0.110 4.110 4 N -0.198 5.198 5 C -0.125 4.125 6 C 0.089 3.911 7 N -0.416 5.416 8 C 0.360 3.640 9 O -0.465 6.465 10 C -0.582 4.582 11 H 0.084 0.916 12 C -0.132 4.132 13 N -0.399 5.399 14 Si 0.733 3.267 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.194 1.194 18 C -0.179 4.179 19 H 0.092 0.908 20 H 0.104 0.896 21 H 0.102 0.898 22 H 0.219 0.781 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.211 0.789 26 H 0.078 0.922 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.227 6.629 2.552 16.802 hybrid contribution -0.869 -0.320 -1.217 1.529 sum -16.095 6.309 1.335 17.339 Atomic orbital electron populations 1.21988 0.76979 1.04499 1.03283 1.45405 1.07398 1.07179 1.55387 1.24984 0.85622 0.93483 1.06874 1.70223 1.19087 1.11960 1.18553 1.21024 0.94404 0.90470 1.06626 1.19035 0.89492 0.95076 0.87508 1.46120 1.31792 1.58449 1.05199 1.18200 0.78029 0.77345 0.90430 1.90591 1.57490 1.52084 1.46380 1.20850 1.11610 1.34227 0.91516 0.91570 1.25701 0.95705 0.93800 0.97983 1.70021 1.14098 1.24013 1.31722 0.86442 0.78347 0.78800 0.83159 1.19321 1.20618 1.19377 1.22563 0.90841 0.92535 1.12004 0.90785 0.89645 0.89766 0.78114 0.92155 0.92241 0.78875 0.92151 0.80799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.18 59.85 0.67 1.13 15 2 N -0.47 -5.39 3.15 -125.99 -0.40 -5.79 15 3 C 0.17 2.24 12.56 -90.37 -1.14 1.11 15 4 N -0.48 -8.56 11.25 -10.87 -0.12 -8.68 15 5 C 0.00 0.07 6.46 -82.85 -0.54 -0.47 15 6 C 0.21 4.65 6.21 -5.20 -0.03 4.62 15 7 N -0.76 -18.66 5.54 -62.90 -0.35 -19.01 15 8 C 0.56 16.71 7.75 -12.98 -0.10 16.61 15 9 O -0.58 -19.66 15.02 5.20 0.08 -19.59 15 10 C -0.54 -16.10 9.54 -35.63 -0.34 -16.44 15 11 H 0.07 1.80 7.85 -52.49 -0.41 1.39 15 12 C 0.09 2.53 5.50 -17.37 -0.10 2.44 15 13 N -0.77 -23.83 11.83 55.55 0.66 -23.17 15 14 Si 0.91 20.80 29.56 -169.99 -5.02 15.78 15 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 18 C -0.05 -0.66 11.49 -16.56 -0.19 -0.86 15 19 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 15 20 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 15 21 H 0.08 0.44 8.14 -51.93 -0.42 0.01 15 22 H 0.20 1.73 8.06 -52.49 -0.42 1.31 15 23 H 0.06 1.42 8.14 -51.93 -0.42 1.00 15 24 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 25 H 0.38 8.60 8.44 -40.82 -0.34 8.25 15 26 H 0.27 7.51 8.29 -40.82 -0.34 7.17 15 27 H 0.17 2.09 8.06 -52.49 -0.42 1.67 15 LS Contribution 249.77 15.07 3.76 3.76 Total: -1.00 -38.05 249.77 -6.00 -44.05 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -2.85 Total: 4.49 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -1.76 Total: 8.14 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.21 Total: -56.64 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.08 Total: -19.59 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -38.05 -6.00 -44.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953058691.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.722 kcal (2) G-P(sol) polarization free energy of solvation -38.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds