Wall clock time and date at job start Sun Mar 29 2020 21:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35046 * 126.39446 * 2 1 4 4 N 1.30499 * 108.69457 * 180.02562 * 3 2 1 5 5 C 1.34128 * 109.26095 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.99126 * 180.26420 * 5 4 3 7 7 N 1.46498 * 109.47161 * 274.68730 * 6 5 4 8 8 C 1.34774 * 119.99782 * 180.02562 * 7 6 5 9 9 O 1.21686 * 120.00439 * 0.02562 * 8 7 6 10 10 C 1.46383 * 119.99848 * 180.02562 * 8 7 6 11 11 H 1.07995 * 119.99920 * 359.97438 * 10 8 7 12 12 C 1.40052 * 119.99914 * 180.02562 * 10 8 7 13 13 N 1.30670 * 119.99807 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 119.99954 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47142 * 59.99621 * 14 12 10 16 16 H 1.48494 * 109.47106 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46911 * 299.99738 * 14 12 10 18 18 C 1.34675 * 108.01655 * 0.02562 * 5 4 3 19 19 H 1.09006 * 109.46843 * 270.00040 * 1 2 3 20 20 H 1.09001 * 109.46928 * 29.99320 * 1 2 3 21 21 H 1.08996 * 109.47351 * 149.99542 * 1 2 3 22 22 H 1.08000 * 125.65569 * 359.97438 * 3 2 1 23 23 H 1.09003 * 109.47361 * 34.69044 * 6 5 4 24 24 H 1.08999 * 109.46998 * 154.68800 * 6 5 4 25 25 H 0.97000 * 120.00524 * 0.02562 * 7 6 5 26 26 H 0.97006 * 119.99825 * 180.02562 * 13 12 10 27 27 H 1.07999 * 126.58816 * 179.97438 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5461 -0.6505 -0.0015 6 6 4.7890 -1.5025 0.0033 7 7 5.2617 -1.6844 -1.3714 8 6 6.3667 -2.4172 -1.6126 9 8 6.9717 -2.9282 -0.6886 10 6 6.8393 -2.5985 -2.9861 11 1 6.3023 -2.1454 -3.8062 12 6 7.9874 -3.3605 -3.2368 13 7 8.6369 -3.9092 -2.2446 14 14 8.5901 -3.5924 -4.9896 15 1 8.9011 -2.2682 -5.5854 16 1 9.8145 -4.4326 -4.9850 17 1 7.5339 -4.2604 -5.7918 18 6 2.2772 -1.1018 -0.0021 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 0.8901 -0.5137 21 1 -0.3634 -0.8899 -0.5139 22 1 1.9335 2.1145 -0.0004 23 1 5.5639 -1.0115 0.5920 24 1 4.5615 -2.4746 0.4409 25 1 4.7793 -1.2775 -2.1080 26 1 9.4323 -4.4366 -2.4182 27 1 1.9612 -2.1345 -0.0033 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953058691.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:18 Heat of formation + Delta-G solvation = -5.325228 kcal Electronic energy + Delta-G solvation = -12966.309568 eV Core-core repulsion = 10531.129675 eV Total energy + Delta-G solvation = -2435.179893 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.98655 -39.30821 -35.79172 -34.68953 -34.14310 -31.06702 -28.99936 -27.85779 -25.99531 -22.09818 -21.87637 -21.20126 -19.28901 -17.84620 -17.38987 -16.64328 -15.97641 -15.87376 -15.75447 -14.97170 -14.63806 -14.33705 -13.72640 -13.44095 -13.26158 -13.19211 -13.04705 -12.66274 -12.60414 -12.03599 -10.92600 -10.89128 -10.50741 -9.97076 -9.46894 -9.37810 -8.26973 -6.84865 1.07499 1.40712 1.45281 1.56900 1.98104 2.03893 2.28968 2.48265 3.37682 3.58550 3.68975 3.95685 4.10584 4.33916 4.46469 4.51680 4.74950 4.77804 5.00359 5.27666 5.32382 5.68237 5.88304 6.20726 6.28698 6.35921 6.87062 7.16708 7.55213 8.49605 8.68544 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.062985 B = 0.006206 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.442688 B = 4511.024425 C = 4697.460432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.460 5.460 3 C 0.186 3.814 4 N -0.535 5.535 5 C -0.038 4.038 6 C 0.222 3.778 7 N -0.747 5.747 8 C 0.537 3.463 9 O -0.633 6.633 10 C -0.574 4.574 11 H 0.085 0.915 12 C 0.027 3.973 13 N -0.822 5.822 14 Si 1.002 2.998 15 H -0.256 1.256 16 H -0.272 1.272 17 H -0.252 1.252 18 C -0.027 4.027 19 H 0.091 0.909 20 H 0.112 0.888 21 H 0.096 0.904 22 H 0.245 0.755 23 H 0.027 0.973 24 H 0.056 0.944 25 H 0.390 0.610 26 H 0.275 0.725 27 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.692 7.412 0.002 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.142 5.142 3 C -0.097 4.097 4 N -0.254 5.254 5 C -0.166 4.166 6 C 0.097 3.903 7 N -0.401 5.401 8 C 0.341 3.659 9 O -0.520 6.520 10 C -0.611 4.611 11 H 0.103 0.897 12 C -0.188 4.188 13 N -0.452 5.452 14 Si 0.821 3.179 15 H -0.180 1.180 16 H -0.197 1.197 17 H -0.176 1.176 18 C -0.163 4.163 19 H 0.110 0.890 20 H 0.131 0.869 21 H 0.115 0.885 22 H 0.261 0.739 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.223 0.777 26 H 0.085 0.915 27 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -17.629 7.455 0.781 19.157 hybrid contribution -0.290 -0.490 -0.583 0.815 sum -17.919 6.965 0.198 19.226 Atomic orbital electron populations 1.22421 0.73230 1.06556 1.05123 1.45686 1.09436 1.05702 1.53362 1.25723 0.84415 0.95354 1.04180 1.70083 1.22367 1.11955 1.21039 1.20465 0.94057 0.90860 1.11230 1.18858 0.90691 0.95535 0.85240 1.45849 1.30389 1.56911 1.06942 1.18656 0.78977 0.77602 0.90614 1.90539 1.59433 1.54365 1.47713 1.21388 1.12753 1.35100 0.91846 0.89654 1.27031 0.95268 0.92515 1.03985 1.70192 1.14865 1.24775 1.35332 0.85016 0.78089 0.79371 0.75422 1.18016 1.19659 1.17593 1.22726 0.89934 0.94166 1.09473 0.89001 0.86929 0.88524 0.73883 0.95437 0.92618 0.77694 0.91470 0.78715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 11.18 127.77 1.43 1.94 15 2 N -0.46 -9.07 3.15 -552.52 -1.74 -10.81 15 3 C 0.19 4.35 12.56 180.26 2.26 6.62 15 4 N -0.54 -18.92 11.25 -188.31 -2.12 -21.04 15 5 C -0.04 -1.39 6.46 41.39 0.27 -1.13 15 6 C 0.22 10.16 6.21 85.63 0.53 10.69 15 7 N -0.75 -38.07 5.54 -471.15 -2.61 -40.68 15 8 C 0.54 33.59 7.75 86.36 0.67 34.26 15 9 O -0.63 -45.01 15.02 -4.30 -0.06 -45.08 15 10 C -0.57 -34.47 9.54 24.83 0.24 -34.24 15 11 H 0.09 4.61 7.85 -2.91 -0.02 4.59 15 12 C 0.03 1.56 5.50 85.31 0.47 2.03 15 13 N -0.82 -52.25 11.83 21.84 0.26 -51.99 15 14 Si 1.00 42.42 29.56 68.60 2.03 44.45 15 15 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 16 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 17 H -0.25 -9.93 7.11 99.48 0.71 -9.22 15 18 C -0.03 -0.73 11.49 83.09 0.95 0.22 15 19 H 0.09 0.46 8.14 -2.38 -0.02 0.45 15 20 H 0.11 0.33 8.14 -2.39 -0.02 0.31 15 21 H 0.10 0.57 8.14 -2.39 -0.02 0.55 15 22 H 0.25 3.19 8.06 -2.91 -0.02 3.16 15 23 H 0.03 1.40 8.14 -2.39 -0.02 1.38 15 24 H 0.06 2.53 8.14 -2.39 -0.02 2.51 15 25 H 0.39 18.03 8.44 -92.71 -0.78 17.25 15 26 H 0.28 15.78 8.29 -92.70 -0.77 15.01 15 27 H 0.20 4.27 8.06 -2.91 -0.02 4.25 15 Total: -1.00 -87.35 249.77 2.97 -84.38 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.40 Total: 20.38 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: 6.82 Total: 20.40 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -6.21 Total: -124.53 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.06 Total: -45.08 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -87.35 2.97 -84.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953058691.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.052 kcal (2) G-P(sol) polarization free energy of solvation -87.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds