Wall clock time and date at job start Sun Mar 29 2020 21:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34666 * 126.59444 * 2 1 4 4 N 1.34126 * 108.02240 * 179.97438 * 3 2 1 5 5 C 1.30494 * 109.25549 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.64842 * 180.26194 * 5 4 3 7 7 N 1.46902 * 109.47158 * 274.69335 * 6 5 4 8 8 C 1.46903 * 110.99904 * 293.95176 * 7 6 5 9 9 C 1.46899 * 110.99721 * 170.00107 * 7 6 5 10 10 C 1.50699 * 109.47120 * 189.99842 * 9 7 6 11 11 H 1.08003 * 120.00105 * 359.97438 * 10 9 7 12 12 C 1.37881 * 120.00152 * 179.97438 * 10 9 7 13 13 N 1.31511 * 119.99827 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99950 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46692 * 90.00105 * 14 12 10 16 16 H 1.48502 * 109.46864 * 209.99838 * 14 12 10 17 17 H 1.48497 * 109.47166 * 330.00258 * 14 12 10 18 18 N 1.35044 * 108.70229 * 0.02562 * 5 4 3 19 19 H 0.97000 * 126.39445 * 180.02562 * 18 5 4 20 20 H 1.08999 * 109.46995 * 270.04298 * 1 2 3 21 21 H 1.08996 * 109.46974 * 30.04358 * 1 2 3 22 22 H 1.09002 * 109.46961 * 150.04256 * 1 2 3 23 23 H 1.07998 * 125.98447 * 359.93055 * 3 2 1 24 24 H 1.09005 * 109.47095 * 34.69478 * 6 5 4 25 25 H 1.08994 * 109.47195 * 154.69227 * 6 5 4 26 26 H 1.08992 * 109.46985 * 59.99990 * 8 7 6 27 27 H 1.08993 * 109.46908 * 180.02562 * 8 7 6 28 28 H 1.09007 * 109.46744 * 299.99983 * 8 7 6 29 29 H 1.09004 * 109.47289 * 309.99292 * 9 7 6 30 30 H 1.09007 * 109.47430 * 69.99896 * 9 7 6 31 31 H 0.97003 * 120.00362 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6540 0.0006 5 6 3.5968 -0.6508 0.0004 6 6 4.8318 -1.5145 0.0065 7 7 5.3050 -1.7019 -1.3716 8 6 4.3387 -2.4795 -2.1588 9 6 6.6306 -2.3347 -1.3914 10 6 7.1884 -2.2884 -2.7906 11 1 6.6153 -1.8348 -3.5857 12 6 8.4304 -2.8253 -3.0557 13 7 8.9169 -2.7854 -4.2769 14 14 9.4221 -3.6092 -1.6804 15 1 9.0909 -5.0542 -1.5931 16 1 10.8713 -3.4497 -1.9621 17 1 9.0922 -2.9471 -0.3928 18 7 2.3229 -1.0991 -0.0009 19 1 2.0392 -2.0267 -0.0010 20 1 -0.3633 0.0008 1.0277 21 1 -0.3633 0.8896 -0.5145 22 1 -0.3633 -0.8904 -0.5132 23 1 1.9865 2.1116 -0.0011 24 1 5.6108 -1.0304 0.5955 25 1 4.5949 -2.4841 0.4443 26 1 3.3847 -1.9532 -2.1855 27 1 4.7140 -2.6038 -3.1745 28 1 4.2009 -3.4588 -1.7003 29 1 7.2987 -1.7999 -0.7162 30 1 6.5429 -3.3724 -1.0693 31 1 9.7909 -3.1627 -4.4634 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138935556.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:03 Heat of formation + Delta-G solvation = 61.251050 kcal Electronic energy + Delta-G solvation = -13473.706814 eV Core-core repulsion = 11177.246979 eV Total energy + Delta-G solvation = -2296.459835 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.89519 -36.73134 -32.74588 -32.51668 -31.58140 -28.78206 -27.50834 -25.47583 -23.50449 -20.95062 -20.65070 -19.91125 -17.27078 -16.67643 -15.45443 -14.72247 -14.49389 -14.15711 -13.90773 -13.43751 -13.14814 -12.81630 -12.61914 -12.38060 -12.13522 -11.78643 -11.30129 -11.09407 -10.71311 -10.34898 -9.86569 -9.77963 -9.67918 -9.31449 -8.58144 -8.06848 -7.46174 -6.04837 -4.02593 2.15052 3.20583 3.27933 3.35213 3.37271 3.37987 4.41866 4.67096 4.87723 4.97478 5.04836 5.27205 5.37991 5.41859 5.52485 5.70427 5.82479 5.96794 5.98023 6.12898 6.37301 6.60015 6.77012 6.91257 6.95244 7.48801 7.57271 7.82278 7.95240 8.37428 8.63792 9.03899 9.55912 11.08298 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.066493 B = 0.006544 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.998407 B = 4277.751825 C = 4361.369880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.042 4.042 3 C -0.026 4.026 4 N -0.473 5.473 5 C 0.234 3.766 6 C 0.134 3.866 7 N -0.521 5.521 8 C 0.034 3.966 9 C 0.163 3.837 10 C -0.510 4.510 11 H 0.081 0.919 12 C 0.069 3.931 13 N -0.900 5.900 14 Si 0.876 3.124 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.266 1.266 18 N -0.567 5.567 19 H 0.413 0.587 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.061 0.939 23 H 0.165 0.835 24 H 0.101 0.899 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.011 0.989 29 H 0.033 0.967 30 H -0.014 1.014 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.053 1.096 10.024 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.157 4.157 3 C -0.175 4.175 4 N -0.192 5.192 5 C -0.030 4.030 6 C 0.003 3.997 7 N -0.245 5.245 8 C -0.114 4.114 9 C 0.037 3.963 10 C -0.548 4.548 11 H 0.099 0.901 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.703 3.297 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.191 1.191 18 N -0.171 5.171 19 H 0.250 0.750 20 H 0.087 0.913 21 H 0.099 0.901 22 H 0.080 0.920 23 H 0.183 0.817 24 H 0.119 0.881 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.029 0.971 29 H 0.051 0.949 30 H 0.003 0.997 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.126 2.074 9.696 17.259 hybrid contribution -0.351 -2.179 0.918 2.390 sum -14.477 -0.104 10.614 17.951 Atomic orbital electron populations 1.20155 0.87477 1.03133 1.02274 1.21194 0.94191 0.87423 1.12881 1.22118 0.88627 0.98359 1.08363 1.70271 1.21851 1.08323 1.18774 1.23227 0.85154 0.91113 1.03537 1.20457 0.91081 0.94792 0.93323 1.61892 1.03867 1.50776 1.07982 1.22303 0.94815 0.93676 1.00621 1.20233 0.85272 0.91496 0.99279 1.21003 1.02652 1.38005 0.93124 0.90082 1.24890 0.97279 0.95751 0.95362 1.69890 1.18521 1.46099 1.19335 0.86857 0.79791 0.79879 0.83192 1.20408 1.21072 1.19064 1.43260 1.07181 1.09061 1.57571 0.74951 0.91338 0.90125 0.92009 0.81728 0.88082 0.94381 0.93849 0.89669 0.97054 0.94884 0.99668 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.44 36.01 0.38 -0.21 16 2 C -0.04 -0.53 7.24 -81.60 -0.59 -1.12 16 3 C -0.03 -0.39 11.79 -17.81 -0.21 -0.60 16 4 N -0.47 -8.81 11.25 -10.82 -0.12 -8.93 16 5 C 0.23 3.96 6.66 -155.42 -1.03 2.93 16 6 C 0.13 2.35 5.59 -4.97 -0.03 2.32 16 7 N -0.52 -11.17 4.74 -245.82 -1.17 -12.34 16 8 C 0.03 0.66 9.18 60.07 0.55 1.21 16 9 C 0.16 3.95 3.79 -4.98 -0.02 3.93 16 10 C -0.51 -14.59 9.01 -34.44 -0.31 -14.90 16 11 H 0.08 2.54 7.37 -52.48 -0.39 2.16 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 14 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 18 N -0.57 -7.54 5.71 -6.54 -0.04 -7.58 16 19 H 0.41 4.28 8.96 -40.82 -0.37 3.92 16 20 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.17 2.02 8.06 -52.49 -0.42 1.60 16 24 H 0.10 1.79 7.93 -51.93 -0.41 1.38 16 25 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 26 H 0.04 0.75 6.93 -51.93 -0.36 0.39 16 27 H 0.08 1.84 6.76 -51.93 -0.35 1.49 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.03 0.81 6.99 -51.93 -0.36 0.45 16 30 H -0.01 -0.34 7.55 -51.93 -0.39 -0.73 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 262.60 15.07 3.96 3.96 Total: -1.00 -33.20 262.60 -6.96 -40.16 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.33 Total: -0.57 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.36 Total: -4.53 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.55 Total: -55.74 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.20 -6.96 -40.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138935556.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.414 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds