Wall clock time and date at job start Sun Mar 29 2020 21:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34666 * 126.59444 * 2 1 4 4 N 1.34126 * 108.02240 * 179.97438 * 3 2 1 5 5 C 1.30494 * 109.25549 * 0.02562 * 4 3 2 6 6 C 1.50704 * 125.64842 * 180.26194 * 5 4 3 7 7 N 1.46902 * 109.47158 * 274.69335 * 6 5 4 8 8 C 1.46903 * 110.99904 * 293.95176 * 7 6 5 9 9 C 1.46899 * 110.99721 * 170.00107 * 7 6 5 10 10 C 1.50699 * 109.47120 * 189.99842 * 9 7 6 11 11 H 1.08003 * 120.00105 * 359.97438 * 10 9 7 12 12 C 1.37881 * 120.00152 * 179.97438 * 10 9 7 13 13 N 1.31511 * 119.99827 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99950 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46692 * 90.00105 * 14 12 10 16 16 H 1.48502 * 109.46864 * 209.99838 * 14 12 10 17 17 H 1.48497 * 109.47166 * 330.00258 * 14 12 10 18 18 N 1.35044 * 108.70229 * 0.02562 * 5 4 3 19 19 H 0.97000 * 126.39445 * 180.02562 * 18 5 4 20 20 H 1.08999 * 109.46995 * 270.04298 * 1 2 3 21 21 H 1.08996 * 109.46974 * 30.04358 * 1 2 3 22 22 H 1.09002 * 109.46961 * 150.04256 * 1 2 3 23 23 H 1.07998 * 125.98447 * 359.93055 * 3 2 1 24 24 H 1.09005 * 109.47095 * 34.69478 * 6 5 4 25 25 H 1.08994 * 109.47195 * 154.69227 * 6 5 4 26 26 H 1.08992 * 109.46985 * 59.99990 * 8 7 6 27 27 H 1.08993 * 109.46908 * 180.02562 * 8 7 6 28 28 H 1.09007 * 109.46744 * 299.99983 * 8 7 6 29 29 H 1.09004 * 109.47289 * 309.99292 * 9 7 6 30 30 H 1.09007 * 109.47430 * 69.99896 * 9 7 6 31 31 H 0.97003 * 120.00362 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0812 0.0000 4 7 3.5812 0.6540 0.0006 5 6 3.5968 -0.6508 0.0004 6 6 4.8318 -1.5145 0.0065 7 7 5.3050 -1.7019 -1.3716 8 6 4.3387 -2.4795 -2.1588 9 6 6.6306 -2.3347 -1.3914 10 6 7.1884 -2.2884 -2.7906 11 1 6.6153 -1.8348 -3.5857 12 6 8.4304 -2.8253 -3.0557 13 7 8.9169 -2.7854 -4.2769 14 14 9.4221 -3.6092 -1.6804 15 1 9.0909 -5.0542 -1.5931 16 1 10.8713 -3.4497 -1.9621 17 1 9.0922 -2.9471 -0.3928 18 7 2.3229 -1.0991 -0.0009 19 1 2.0392 -2.0267 -0.0010 20 1 -0.3633 0.0008 1.0277 21 1 -0.3633 0.8896 -0.5145 22 1 -0.3633 -0.8904 -0.5132 23 1 1.9865 2.1116 -0.0011 24 1 5.6108 -1.0304 0.5955 25 1 4.5949 -2.4841 0.4443 26 1 3.3847 -1.9532 -2.1855 27 1 4.7140 -2.6038 -3.1745 28 1 4.2009 -3.4588 -1.7003 29 1 7.2987 -1.7999 -0.7162 30 1 6.5429 -3.3724 -1.0693 31 1 9.7909 -3.1627 -4.4634 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138935556.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:02 Heat of formation + Delta-G solvation = 35.998375 kcal Electronic energy + Delta-G solvation = -13474.801852 eV Core-core repulsion = 11177.246979 eV Total energy + Delta-G solvation = -2297.554873 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.02048 -38.36282 -34.71887 -33.73240 -32.74543 -30.36459 -29.07700 -26.79504 -25.10440 -22.40935 -22.01983 -21.18232 -19.06629 -18.14137 -16.90501 -16.45080 -16.05172 -15.53417 -15.28911 -14.68188 -14.53862 -14.22445 -13.67729 -13.50467 -13.45759 -13.19358 -13.00614 -12.66503 -12.56054 -12.15704 -11.78575 -11.49724 -10.95418 -10.85620 -10.78106 -9.22059 -9.01325 -8.27112 -6.31453 1.05665 1.36448 1.40098 1.50731 2.12159 2.21033 2.36462 3.06028 3.34448 3.51855 4.06908 4.17355 4.33098 4.35696 4.46865 4.54478 4.63907 4.77410 4.83297 4.90347 4.96855 5.12856 5.13353 5.37577 5.52482 5.85398 5.93276 6.27778 6.49552 6.61981 6.74379 7.22804 7.31915 8.89822 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.066493 B = 0.006544 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.998407 B = 4277.751825 C = 4361.369880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.016 4.016 3 C -0.063 4.063 4 N -0.518 5.518 5 C 0.208 3.792 6 C 0.138 3.862 7 N -0.548 5.548 8 C 0.044 3.956 9 C 0.173 3.827 10 C -0.519 4.519 11 H 0.033 0.967 12 C 0.007 3.993 13 N -0.950 5.950 14 Si 0.951 3.049 15 H -0.264 1.264 16 H -0.283 1.283 17 H -0.246 1.246 18 N -0.554 5.554 19 H 0.429 0.571 20 H 0.088 0.912 21 H 0.094 0.906 22 H 0.077 0.923 23 H 0.182 0.818 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.033 0.967 30 H 0.000 1.000 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.673 0.110 12.279 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.132 4.132 3 C -0.210 4.210 4 N -0.238 5.238 5 C -0.056 4.056 6 C 0.009 3.991 7 N -0.273 5.273 8 C -0.105 4.105 9 C 0.047 3.953 10 C -0.558 4.558 11 H 0.051 0.949 12 C -0.190 4.190 13 N -0.591 5.591 14 Si 0.774 3.226 15 H -0.188 1.188 16 H -0.209 1.209 17 H -0.169 1.169 18 N -0.160 5.160 19 H 0.269 0.731 20 H 0.106 0.894 21 H 0.113 0.887 22 H 0.096 0.904 23 H 0.199 0.801 24 H 0.112 0.888 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.017 0.983 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.784 1.078 11.965 19.836 hybrid contribution 0.003 -1.779 0.151 1.785 sum -15.781 -0.701 12.117 19.908 Atomic orbital electron populations 1.20343 0.83858 1.04627 1.03988 1.21873 0.96062 0.86288 1.09013 1.22561 0.88028 1.00139 1.10269 1.70161 1.24242 1.09660 1.19725 1.22905 0.86090 0.90774 1.05813 1.20387 0.91469 0.96373 0.90856 1.61706 1.03345 1.51265 1.10951 1.22165 0.94732 0.94985 0.98568 1.19970 0.86860 0.92397 0.96100 1.21244 1.02699 1.37394 0.94428 0.94906 1.25889 0.98560 0.96348 0.98239 1.70059 1.19275 1.47667 1.22070 0.85659 0.77556 0.79381 0.80009 1.18844 1.20903 1.16915 1.43192 1.06149 1.10148 1.56475 0.73132 0.89359 0.88734 0.90430 0.80101 0.88774 0.91320 0.92131 0.93252 0.94684 0.94871 0.98260 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.44 71.24 0.74 -0.11 16 2 C -0.02 -0.35 7.24 40.95 0.30 -0.06 16 3 C -0.06 -1.80 11.79 83.52 0.98 -0.81 16 4 N -0.52 -19.04 11.25 -188.14 -2.12 -21.16 16 5 C 0.21 6.78 6.66 138.13 0.92 7.69 16 6 C 0.14 4.67 5.59 85.56 0.48 5.14 16 7 N -0.55 -23.28 4.74 -931.63 -4.42 -27.70 16 8 C 0.04 1.66 9.18 127.69 1.17 2.83 16 9 C 0.17 8.30 3.79 85.56 0.32 8.62 16 10 C -0.52 -30.55 9.01 25.60 0.23 -30.32 16 11 H 0.03 2.18 7.37 -2.91 -0.02 2.16 16 12 C 0.01 0.40 5.47 84.66 0.46 0.86 16 13 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 14 Si 0.95 43.73 27.47 68.60 1.88 45.61 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 18 N -0.55 -13.28 5.71 -174.60 -1.00 -14.28 16 19 H 0.43 7.40 8.96 -92.71 -0.83 6.57 16 20 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 21 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 22 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.18 4.24 8.06 -2.91 -0.02 4.22 16 24 H 0.09 3.25 7.93 -2.38 -0.02 3.23 16 25 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 26 H 0.06 2.04 6.93 -2.39 -0.02 2.03 16 27 H 0.05 2.20 6.76 -2.39 -0.02 2.18 16 28 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.03 1.58 6.99 -2.38 -0.02 1.57 16 30 H 0.00 -0.01 7.55 -2.38 -0.02 -0.03 16 31 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -74.39 262.60 0.50 -73.89 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.23 Total: 9.64 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 5.61 Total: -6.15 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -7.23 Total: -122.99 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.61 kcal Total: -74.39 0.50 -73.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138935556.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.890 kcal (2) G-P(sol) polarization free energy of solvation -74.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds