Wall clock time and date at job start Sun Mar 29 2020 21:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 N 1.34969 * 107.86208 * 179.83752 * 3 2 1 5 5 H 0.97006 * 125.97406 * 180.12256 * 4 3 2 6 6 N 1.40068 * 108.05043 * 0.42902 * 4 3 2 7 7 C 1.31226 * 108.16467 * 359.73170 * 6 4 3 8 8 N 1.40163 * 125.97118 * 180.02562 * 7 6 4 9 9 C 1.34781 * 119.99996 * 359.95910 * 8 7 6 10 10 O 1.21293 * 119.99560 * 0.02562 * 9 8 7 11 11 C 1.50692 * 119.99795 * 180.02562 * 9 8 7 12 12 C 1.50697 * 109.47219 * 180.02562 * 11 9 8 13 13 H 1.08004 * 120.00053 * 0.02562 * 12 11 9 14 14 C 1.37872 * 120.00445 * 179.97438 * 12 11 9 15 15 N 1.31514 * 119.99988 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00444 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46969 * 89.99629 * 16 14 12 18 18 H 1.48500 * 109.47459 * 210.00024 * 16 14 12 19 19 H 1.48497 * 109.46962 * 330.00215 * 16 14 12 20 20 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 23 23 H 1.08006 * 126.06719 * 0.02562 * 3 2 1 24 24 H 0.97001 * 119.99702 * 179.97438 * 8 7 6 25 25 H 1.09005 * 109.47108 * 300.00127 * 11 9 8 26 26 H 1.08998 * 109.47233 * 59.99850 * 11 9 8 27 27 H 0.96998 * 120.00136 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 7 3.5853 0.6714 0.0036 5 1 4.3719 1.2392 0.0062 6 7 3.5816 -0.7292 -0.0040 7 6 2.3336 -1.1350 -0.0061 8 7 1.9014 -2.4683 -0.0129 9 6 2.8039 -3.4693 -0.0187 10 8 3.9902 -3.2162 -0.0176 11 6 2.3392 -4.9027 -0.0265 12 6 3.5358 -5.8187 -0.0313 13 1 4.5332 -5.4043 -0.0285 14 6 3.3575 -7.1858 -0.0382 15 7 2.1431 -7.6906 -0.0401 16 14 4.8409 -8.3213 -0.0434 17 1 5.2335 -8.6291 1.3553 18 1 4.4972 -9.5815 -0.7498 19 1 5.9711 -7.6559 -0.7396 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 -0.8872 -0.5186 22 1 -0.3633 0.8928 -0.5090 23 1 1.9719 2.1211 0.0004 24 1 0.9527 -2.6706 -0.0136 25 1 1.7386 -5.0948 0.8626 26 1 1.7381 -5.0849 -0.9173 27 1 2.0177 -8.6524 -0.0446 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189488.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:30 Heat of formation + Delta-G solvation = 7.304113 kcal Electronic energy + Delta-G solvation = -13121.644885 eV Core-core repulsion = 10687.012641 eV Total energy + Delta-G solvation = -2434.632244 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.26518 -40.25595 -35.82679 -35.12217 -33.05992 -31.81573 -30.46630 -27.18399 -26.07772 -23.35561 -21.28694 -20.66097 -18.70209 -18.51877 -17.52794 -17.04494 -16.48899 -16.36853 -15.42716 -14.78518 -14.48738 -14.15434 -13.86161 -13.51080 -13.34078 -12.86683 -12.69223 -12.63619 -12.06090 -11.97471 -11.49129 -11.47825 -10.63359 -10.55943 -9.74412 -9.09816 -8.26684 -6.33856 1.00202 1.39666 1.40558 1.47917 1.52954 1.72368 2.27934 2.39682 2.63227 3.08806 3.84949 4.09361 4.46139 4.48994 4.73847 4.98648 5.03157 5.05284 5.22691 5.28078 5.42595 5.69234 5.88190 5.98501 6.28486 6.64546 6.76697 6.98830 7.30897 7.44924 8.85481 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.064699 B = 0.006861 C = 0.006231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.666879 B = 4080.274731 C = 4492.494649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.277 4.277 3 C 0.092 3.908 4 N -0.473 5.473 5 H 0.453 0.547 6 N -0.346 5.346 7 C 0.276 3.724 8 N -0.637 5.637 9 C 0.508 3.492 10 O -0.541 6.541 11 C 0.015 3.985 12 C -0.540 4.540 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.921 5.921 16 Si 0.964 3.036 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.277 1.277 20 H 0.068 0.932 21 H 0.057 0.943 22 H 0.089 0.911 23 H 0.232 0.768 24 H 0.431 0.569 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.956 17.548 0.069 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.290 4.290 3 C -0.056 4.056 4 N -0.184 5.184 5 H 0.299 0.701 6 N -0.177 5.177 7 C 0.020 3.980 8 N -0.290 5.290 9 C 0.297 3.703 10 O -0.414 6.414 11 C -0.024 4.024 12 C -0.578 4.578 13 H 0.070 0.930 14 C -0.185 4.185 15 N -0.561 5.561 16 Si 0.789 3.211 17 H -0.196 1.196 18 H -0.196 1.196 19 H -0.202 1.202 20 H 0.087 0.913 21 H 0.076 0.924 22 H 0.108 0.892 23 H 0.249 0.751 24 H 0.270 0.730 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.006 17.100 0.067 17.563 hybrid contribution -0.050 -0.460 0.008 0.463 sum -4.057 16.640 0.075 17.128 Atomic orbital electron populations 1.20091 0.86702 1.03395 1.02417 1.20271 0.98811 0.89162 1.20786 1.23063 0.83068 1.01271 0.98158 1.46141 1.08600 1.03953 1.59746 0.70092 1.77946 1.18752 0.90670 1.30349 1.19825 0.92095 0.86433 0.99683 1.43228 1.11265 1.01107 1.73379 1.21976 0.85889 0.88752 0.73642 1.90607 1.18590 1.84829 1.47399 1.19074 0.98128 0.85646 0.99554 1.21328 0.93231 0.91594 1.51650 0.92979 1.25742 0.99118 0.99341 0.94347 1.70012 1.22003 1.13189 1.50882 0.85458 0.79113 0.77935 0.78587 1.19646 1.19552 1.20227 0.91330 0.92384 0.89181 0.75139 0.72971 0.93148 0.93135 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.22 71.24 0.73 -0.42 15 2 C -0.28 -6.90 6.12 -20.03 -0.12 -7.02 15 3 C 0.09 1.75 11.89 83.52 0.99 2.74 15 4 N -0.47 -12.02 7.35 -57.62 -0.42 -12.44 15 5 H 0.45 8.07 8.96 -213.33 -1.91 6.16 15 6 N -0.35 -13.82 10.93 -54.44 -0.59 -14.41 15 7 C 0.28 10.10 7.78 133.32 1.04 11.14 15 8 N -0.64 -24.50 5.45 -307.51 -1.68 -26.18 15 9 C 0.51 25.24 7.79 87.65 0.68 25.92 15 10 O -0.54 -31.35 14.18 -3.07 -0.04 -31.39 15 11 C 0.02 0.82 5.46 29.10 0.16 0.98 15 12 C -0.54 -32.67 8.92 25.60 0.23 -32.44 15 13 H 0.05 3.35 6.75 -2.91 -0.02 3.33 15 14 C 0.01 0.79 5.46 84.65 0.46 1.25 15 15 N -0.92 -54.09 13.29 21.45 0.28 -53.81 15 16 Si 0.96 46.20 29.54 68.60 2.03 48.22 15 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 15 19 H -0.28 -13.43 7.11 99.48 0.71 -12.72 15 20 H 0.07 1.04 8.14 -2.39 -0.02 1.03 15 21 H 0.06 1.00 7.70 -2.39 -0.02 0.99 15 22 H 0.09 1.01 8.14 -2.38 -0.02 0.99 15 23 H 0.23 1.50 8.06 -2.91 -0.02 1.48 15 24 H 0.43 13.01 8.22 -92.71 -0.76 12.25 15 25 H 0.05 2.64 8.14 -2.38 -0.02 2.62 15 26 H 0.05 2.64 8.14 -2.39 -0.02 2.62 15 27 H 0.27 14.74 8.31 -92.71 -0.77 13.97 15 Total: -1.00 -80.77 246.25 2.28 -78.49 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -1.46 Total: 9.38 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 4.17 Total: 2.15 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -2.41 Total: -106.84 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.04 Total: -31.39 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -80.77 2.28 -78.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189488.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.795 kcal (2) G-P(sol) polarization free energy of solvation -80.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds