Wall clock time and date at job start Sun Mar 29 2020 21:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00202 * 2 1 4 4 H 1.48506 * 109.46870 * 269.99824 * 3 2 1 5 5 H 1.48495 * 109.47212 * 29.99539 * 3 2 1 6 6 H 1.48501 * 109.47589 * 150.00086 * 3 2 1 7 7 C 1.37882 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99735 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47172 * 179.97438 * 9 7 2 11 11 O 1.21281 * 120.00063 * 0.02562 * 10 9 7 12 12 N 1.34771 * 120.00221 * 180.02562 * 10 9 7 13 13 C 1.50240 * 130.84122 * 180.02562 * 12 10 9 14 14 C 1.55848 * 101.05163 * 233.98841 * 13 12 10 15 15 C 1.55867 * 103.52864 * 327.66837 * 14 13 12 16 16 C 1.50240 * 130.83560 * 0.03143 * 12 10 9 17 17 C 1.55847 * 101.05077 * 233.94424 * 16 12 10 18 18 C 1.55846 * 101.04996 * 125.33882 * 13 12 10 19 19 H 0.96996 * 120.00126 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46584 * 60.00321 * 9 7 2 21 21 H 1.08998 * 109.47069 * 300.00291 * 9 7 2 22 22 H 1.09002 * 115.85732 * 359.66509 * 13 12 10 23 23 H 1.09000 * 110.62572 * 85.55135 * 14 13 12 24 24 H 1.09000 * 110.62759 * 208.57017 * 14 13 12 25 25 H 1.09006 * 110.09724 * 241.13538 * 15 14 13 26 26 H 1.08999 * 111.74375 * 117.87195 * 15 14 13 27 27 H 1.08991 * 115.86042 * 359.61943 * 16 12 10 28 28 H 1.09003 * 110.62865 * 85.55047 * 17 16 12 29 29 H 1.08998 * 110.62667 * 208.41417 * 17 16 12 30 30 H 1.09006 * 110.62360 * 151.42720 * 18 13 12 31 31 H 1.09001 * 110.62907 * 274.44846 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2302 -3.6446 0.0015 11 8 3.4226 -3.4231 0.0009 12 7 1.7810 -4.9153 0.0018 13 6 2.5252 -6.2205 0.0022 14 6 1.8919 -6.9258 -1.2348 15 6 0.4263 -6.3952 -1.2465 16 6 0.3819 -5.4626 0.0019 17 6 0.4316 -6.4094 1.2388 18 6 1.9045 -6.9178 1.2502 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8880 21 1 0.6247 -2.5563 0.8919 22 1 3.6127 -6.1476 -0.0035 23 1 2.4043 -6.6292 -2.1500 24 1 1.9162 -8.0088 -1.1136 25 1 -0.2729 -7.2235 -1.1319 26 1 0.2078 -5.8326 -2.1541 27 1 -0.4181 -4.7225 0.0081 28 1 0.2198 -5.8568 2.1542 29 1 -0.2701 -7.2349 1.1190 30 1 1.9277 -8.0015 1.1356 31 1 2.4263 -6.6154 2.1582 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198670.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:17 Heat of formation + Delta-G solvation = -48.672021 kcal Electronic energy + Delta-G solvation = -13962.963184 eV Core-core repulsion = 11629.443976 eV Total energy + Delta-G solvation = -2333.519208 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.49406 -39.09848 -35.15019 -32.62595 -31.25518 -30.83265 -30.14045 -25.97072 -23.47541 -23.07150 -20.49852 -19.90379 -18.61405 -17.79893 -16.74836 -16.48001 -16.42502 -15.57956 -15.01161 -14.40726 -14.00595 -13.73299 -13.54200 -13.19910 -13.06143 -12.80879 -12.62881 -12.56153 -12.21768 -12.08658 -11.83703 -11.58936 -11.46430 -10.96499 -10.67098 -10.52434 -9.69014 -8.29384 -6.37751 1.36551 1.38280 1.51000 1.84006 2.08011 2.40857 3.04979 3.55421 3.65121 3.81190 4.12911 4.15239 4.30108 4.35429 4.45138 4.60498 4.63719 4.82153 4.99739 5.04633 5.04933 5.08307 5.17743 5.27041 5.28117 5.41830 5.51267 5.69641 6.04585 6.67692 6.81587 7.29551 7.44327 8.83009 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.055018 B = 0.008027 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.800752 B = 3487.526885 C = 3655.992237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.052 0.948 9 C 0.022 3.978 10 C 0.535 3.465 11 O -0.597 6.597 12 N -0.645 5.645 13 C 0.102 3.898 14 C -0.120 4.120 15 C -0.122 4.122 16 C 0.106 3.894 17 C -0.122 4.122 18 C -0.120 4.120 19 H 0.269 0.731 20 H 0.034 0.966 21 H 0.034 0.966 22 H 0.091 0.909 23 H 0.052 0.948 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 -16.581 -0.015 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.070 0.930 9 C -0.018 4.018 10 C 0.327 3.673 11 O -0.478 6.478 12 N -0.380 5.380 13 C 0.000 4.000 14 C -0.158 4.158 15 C -0.160 4.160 16 C 0.004 3.996 17 C -0.160 4.160 18 C -0.158 4.158 19 H 0.078 0.922 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.109 0.891 23 H 0.071 0.929 24 H 0.133 0.867 25 H 0.132 0.868 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.134 0.866 30 H 0.131 0.869 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.068 -16.197 -0.011 16.329 hybrid contribution 0.484 1.353 -0.004 1.437 sum -1.585 -14.844 -0.016 14.929 Atomic orbital electron populations 1.70033 1.07146 1.28224 1.50853 1.25835 0.95943 1.02831 0.94226 0.85410 0.78404 0.78276 0.78727 1.19459 1.19399 1.20021 1.21369 0.93586 0.91343 1.51674 0.92970 1.18939 0.94007 0.90788 0.98021 1.21147 0.89460 0.83289 0.73403 1.90486 1.19420 1.84907 1.53030 1.50911 1.10347 1.04096 1.72676 1.23851 0.96858 0.81523 0.97789 1.23073 0.95363 1.01267 0.96080 1.23108 0.97428 0.99139 0.96362 1.23969 0.83346 0.94633 0.97670 1.23098 0.97297 0.99211 0.96391 1.23062 0.95293 1.01420 0.96050 0.92237 0.94762 0.94759 0.89089 0.92938 0.86715 0.86754 0.92320 0.87751 0.92569 0.86564 0.86881 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.59 13.29 21.45 0.28 -55.31 16 2 C 0.01 0.62 5.46 84.66 0.46 1.08 16 3 Si 0.97 46.79 29.54 68.60 2.03 48.81 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.54 -33.87 8.92 25.60 0.23 -33.64 16 8 H 0.05 3.44 6.75 -2.91 -0.02 3.42 16 9 C 0.02 1.22 4.82 29.10 0.14 1.36 16 10 C 0.54 27.55 7.99 87.66 0.70 28.25 16 11 O -0.60 -35.12 16.06 -3.03 -0.05 -35.17 16 12 N -0.64 -24.84 2.89 -734.94 -2.12 -26.96 16 13 C 0.10 2.96 5.24 46.23 0.24 3.20 16 14 C -0.12 -2.58 6.48 32.57 0.21 -2.37 16 15 C -0.12 -2.62 6.54 32.58 0.21 -2.40 16 16 C 0.11 3.00 5.05 46.24 0.23 3.23 16 17 C -0.12 -2.60 6.48 32.56 0.21 -2.39 16 18 C -0.12 -2.60 6.53 32.56 0.21 -2.39 16 19 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 20 H 0.03 1.95 8.14 -2.39 -0.02 1.93 16 21 H 0.03 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.11 1.57 7.85 -2.39 -0.02 1.55 16 25 H 0.11 1.55 7.86 -2.38 -0.02 1.53 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.10 3.19 7.87 -2.39 -0.02 3.17 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.12 1.57 7.86 -2.39 -0.02 1.55 16 30 H 0.11 1.56 7.85 -2.38 -0.02 1.54 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -75.62 257.96 4.09 -71.53 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.10 Total: 3.16 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: 2.86 Total: -6.06 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -1.84 Total: -82.27 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.05 Total: -35.17 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -75.62 4.09 -71.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198670.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.854 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds