Wall clock time and date at job start Sun Mar 29 2020 21:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 7 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.09000 * 115.54987 * 350.58109 * 13 12 10 15 15 C 1.52996 * 117.50120 * 136.25080 * 13 12 10 16 16 C 1.52998 * 117.49976 * 204.90871 * 13 12 10 17 17 H 1.09007 * 117.49938 * 0.02562 * 16 13 12 18 18 C 1.53001 * 117.49883 * 145.01625 * 16 13 12 19 19 C 1.52999 * 117.49867 * 248.62429 * 18 16 13 20 20 C 1.52998 * 117.49883 * 179.97438 * 18 16 13 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 0.97005 * 119.99463 * 359.97438 * 12 10 9 25 25 H 1.09000 * 117.49750 * 214.98122 * 15 13 12 26 26 H 1.09001 * 117.49931 * 359.97438 * 15 13 12 27 27 H 1.09000 * 115.54868 * 34.33394 * 18 16 13 28 28 H 1.09000 * 117.50063 * 359.97438 * 19 18 16 29 29 H 1.09010 * 117.49449 * 145.02396 * 19 18 16 30 30 H 1.08999 * 117.50350 * 214.97622 * 20 18 16 31 31 H 1.09000 * 117.49924 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 8 3.4226 -3.4231 0.0001 12 7 1.7809 -4.9153 0.0000 13 6 2.7329 -6.0289 0.0006 14 1 3.7759 -5.7558 -0.1595 15 6 2.4461 -7.2030 0.9386 16 6 2.2568 -7.3656 -0.5716 17 1 1.2353 -7.4164 -0.9488 18 6 3.2812 -8.2169 -1.3243 19 6 3.0923 -8.3790 -2.8339 20 6 2.8053 -9.5539 -1.8959 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 0.8272 -5.0925 0.0000 25 1 3.3004 -7.7026 1.3953 26 1 1.5493 -7.1468 1.5557 27 1 4.3026 -8.1661 -0.9471 28 1 2.2380 -7.8796 -3.2908 29 1 3.9897 -8.4349 -3.4503 30 1 3.5137 -10.3823 -1.8956 31 1 1.7624 -9.8272 -1.7353 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143206926.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:44 Heat of formation + Delta-G solvation = -1.187774 kcal Electronic energy + Delta-G solvation = -13046.622342 eV Core-core repulsion = 10715.162206 eV Total energy + Delta-G solvation = -2331.460136 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.19251 -37.82780 -35.50324 -32.91436 -32.02687 -28.75652 -24.12728 -23.54101 -22.47079 -21.42433 -20.37281 -19.47668 -16.51588 -16.28694 -15.72904 -15.28661 -14.40148 -14.28708 -14.09280 -13.12317 -12.89631 -12.32338 -12.05990 -11.69738 -11.55768 -11.29937 -11.23059 -10.96701 -10.79151 -10.60306 -10.31837 -9.96175 -9.57614 -9.27998 -8.66492 -8.42734 -8.17527 -6.04798 -4.04356 3.37472 3.38822 3.40529 3.46010 3.68115 3.81030 4.29108 4.48696 4.58353 4.76657 4.89493 5.13252 5.18790 5.25325 5.33518 5.35637 5.52842 5.77372 5.80721 5.92664 6.01161 6.07969 6.22912 6.45659 7.06034 7.20106 7.32958 7.96715 8.05529 8.43783 9.06183 9.22129 9.60652 11.07633 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064570 B = 0.005454 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.533063 B = 5132.980573 C = 5182.830382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.055 3.945 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.518 3.482 11 O -0.544 6.544 12 N -0.720 5.720 13 C 0.099 3.901 14 H 0.132 0.868 15 C -0.191 4.191 16 C -0.138 4.138 17 H 0.104 0.896 18 C -0.118 4.118 19 C -0.177 4.177 20 C -0.179 4.179 21 H 0.262 0.738 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.397 0.603 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 -16.341 -1.807 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.093 0.907 9 C -0.034 4.034 10 C 0.309 3.691 11 O -0.419 6.419 12 N -0.372 5.372 13 C -0.008 4.008 14 H 0.150 0.850 15 C -0.230 4.230 16 C -0.157 4.157 17 H 0.122 0.878 18 C -0.137 4.137 19 C -0.214 4.214 20 C -0.216 4.216 21 H 0.072 0.928 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.231 0.769 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.614 -15.988 -1.810 16.301 hybrid contribution -0.195 0.649 0.013 0.677 sum 2.419 -15.339 -1.797 15.632 Atomic orbital electron populations 1.69950 1.06054 1.27025 1.51103 1.25007 0.94915 0.99491 0.95186 0.86472 0.79368 0.82223 0.78875 1.20116 1.21358 1.20106 1.21128 0.94244 0.89105 1.50244 0.90713 1.19245 0.94132 0.90460 0.99522 1.22065 0.91171 0.83168 0.72741 1.90524 1.18080 1.84521 1.48813 1.45804 1.08726 1.05277 1.77379 1.21559 0.95938 0.81779 1.01547 0.84985 1.23501 1.03798 1.03474 0.92229 1.22234 0.99028 0.99294 0.95195 0.87802 1.21672 0.98858 0.97974 0.95152 1.22947 1.03516 1.02288 0.92669 1.22937 1.02176 0.91744 1.04732 0.92848 0.93382 0.93393 0.76948 0.88409 0.88590 0.87730 0.88679 0.88834 0.88976 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -14.92 8.92 -34.44 -0.31 -15.22 16 8 H 0.07 2.28 6.75 -52.49 -0.35 1.93 16 9 C 0.01 0.14 5.46 -29.03 -0.16 -0.01 16 10 C 0.52 11.99 7.82 -10.98 -0.09 11.90 16 11 O -0.54 -14.39 15.03 5.56 0.08 -14.31 16 12 N -0.72 -12.69 5.57 -53.81 -0.30 -12.99 16 13 C 0.10 1.51 6.15 -67.94 -0.42 1.10 16 14 H 0.13 2.26 7.40 -51.93 -0.38 1.88 16 15 C -0.19 -2.31 10.18 -26.70 -0.27 -2.58 16 16 C -0.14 -1.65 5.77 -90.59 -0.52 -2.17 16 17 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 18 C -0.12 -1.28 5.85 -90.62 -0.53 -1.81 16 19 C -0.18 -1.79 10.25 -26.70 -0.27 -2.07 16 20 C -0.18 -1.63 10.25 -26.70 -0.27 -1.90 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 24 H 0.40 5.92 8.83 -40.82 -0.36 5.56 16 25 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 273.57 15.07 4.12 4.12 Total: -1.00 -32.01 273.57 -7.78 -39.79 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.46 Total: 3.25 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -2.94 Total: -11.29 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.44 Total: -38.84 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.08 Total: -14.31 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.01 -7.78 -39.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143206926.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.604 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds