Wall clock time and date at job start Sun Mar 29 2020 21:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 O 1.21278 * 119.99985 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00161 * 180.02562 * 10 9 7 13 13 C 1.46496 * 120.00271 * 180.02562 * 12 10 9 14 14 H 1.09000 * 115.54987 * 350.58109 * 13 12 10 15 15 C 1.52996 * 117.50120 * 136.25080 * 13 12 10 16 16 C 1.52998 * 117.49976 * 204.90871 * 13 12 10 17 17 H 1.09007 * 117.49938 * 0.02562 * 16 13 12 18 18 C 1.53001 * 117.49883 * 145.01625 * 16 13 12 19 19 C 1.52999 * 117.49867 * 248.62429 * 18 16 13 20 20 C 1.52998 * 117.49883 * 179.97438 * 18 16 13 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 0.97005 * 119.99463 * 359.97438 * 12 10 9 25 25 H 1.09000 * 117.49750 * 214.98122 * 15 13 12 26 26 H 1.09001 * 117.49931 * 359.97438 * 15 13 12 27 27 H 1.09000 * 115.54868 * 34.33394 * 18 16 13 28 28 H 1.09000 * 117.50063 * 359.97438 * 19 18 16 29 29 H 1.09010 * 117.49449 * 145.02396 * 19 18 16 30 30 H 1.08999 * 117.50350 * 214.97622 * 20 18 16 31 31 H 1.09000 * 117.49924 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 8 3.4226 -3.4231 0.0001 12 7 1.7809 -4.9153 0.0000 13 6 2.7329 -6.0289 0.0006 14 1 3.7759 -5.7558 -0.1595 15 6 2.4461 -7.2030 0.9386 16 6 2.2568 -7.3656 -0.5716 17 1 1.2353 -7.4164 -0.9488 18 6 3.2812 -8.2169 -1.3243 19 6 3.0923 -8.3790 -2.8339 20 6 2.8053 -9.5539 -1.8959 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 0.8272 -5.0925 0.0000 25 1 3.3004 -7.7026 1.3953 26 1 1.5493 -7.1468 1.5557 27 1 4.3026 -8.1661 -0.9471 28 1 2.2380 -7.8796 -3.2908 29 1 3.9897 -8.4349 -3.4503 30 1 3.5137 -10.3823 -1.8956 31 1 1.7624 -9.8272 -1.7353 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143206926.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:44 Heat of formation + Delta-G solvation = -21.743552 kcal Electronic energy + Delta-G solvation = -13047.513708 eV Core-core repulsion = 10715.162206 eV Total energy + Delta-G solvation = -2332.351502 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.67555 -39.10403 -36.61441 -35.10353 -33.56262 -30.80790 -26.01557 -24.60827 -23.30449 -22.71050 -21.66022 -20.81081 -18.56055 -17.79658 -17.30692 -16.53777 -16.18001 -15.95391 -15.32660 -14.67692 -14.20298 -14.05807 -13.47809 -13.35736 -12.80630 -12.66568 -12.47977 -12.32206 -12.16642 -12.10300 -12.01702 -11.47985 -11.25486 -10.69400 -10.63019 -10.40605 -9.54836 -8.25776 -6.33290 1.40361 1.43378 1.52013 1.79360 2.23719 2.45899 2.67236 3.09564 3.31708 3.62450 3.80942 3.97442 4.17411 4.25738 4.31827 4.36128 4.47351 4.82578 4.85724 4.97901 5.05307 5.07539 5.19067 5.24569 5.29442 5.35370 5.62398 5.75012 6.04696 6.68916 6.82653 7.32701 7.49688 8.86258 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064570 B = 0.005454 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.533063 B = 5132.980573 C = 5182.830382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.055 0.945 9 C 0.009 3.991 10 C 0.521 3.479 11 O -0.585 6.585 12 N -0.699 5.699 13 C 0.056 3.944 14 H 0.108 0.892 15 C -0.168 4.168 16 C -0.112 4.112 17 H 0.115 0.885 18 C -0.138 4.138 19 C -0.186 4.186 20 C -0.158 4.158 21 H 0.268 0.732 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.412 0.588 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.612 -17.644 -1.785 17.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.073 0.927 9 C -0.031 4.031 10 C 0.310 3.690 11 O -0.465 6.465 12 N -0.350 5.350 13 C -0.050 4.050 14 H 0.126 0.874 15 C -0.207 4.207 16 C -0.131 4.131 17 H 0.133 0.867 18 C -0.156 4.156 19 C -0.223 4.223 20 C -0.195 4.195 21 H 0.077 0.923 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.248 0.752 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.297 -17.351 -1.788 17.593 hybrid contribution -0.137 0.957 -0.007 0.966 sum 2.160 -16.394 -1.795 16.633 Atomic orbital electron populations 1.70022 1.07145 1.28210 1.51046 1.25795 0.95868 1.02762 0.94389 0.85498 0.78361 0.78235 0.78919 1.19774 1.19765 1.19725 1.21344 0.93688 0.91291 1.51437 0.92719 1.19081 0.94238 0.90803 0.98941 1.21505 0.89910 0.84512 0.73031 1.90498 1.19306 1.85427 1.51263 1.45416 1.09996 1.04239 1.75313 1.21669 0.94457 0.82205 1.06620 0.87414 1.23586 1.04696 0.99862 0.92537 1.22267 0.99629 0.95782 0.95434 0.86734 1.21727 0.98724 0.99564 0.95624 1.23023 1.03746 1.03240 0.92326 1.23018 1.03016 0.91146 1.02308 0.92333 0.93813 0.93900 0.75220 0.86955 0.87366 0.87757 0.89140 0.88263 0.87425 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.55 13.29 21.45 0.28 -54.27 16 2 C 0.01 0.61 5.46 84.66 0.46 1.07 16 3 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.54 -32.37 8.92 25.60 0.23 -32.15 16 8 H 0.05 3.45 6.75 -2.91 -0.02 3.43 16 9 C 0.01 0.46 5.46 29.10 0.16 0.62 16 10 C 0.52 24.67 7.82 87.66 0.69 25.36 16 11 O -0.59 -32.09 15.03 -3.02 -0.05 -32.13 16 12 N -0.70 -24.48 5.57 -442.55 -2.46 -26.94 16 13 C 0.06 1.69 6.15 44.99 0.28 1.97 16 14 H 0.11 3.80 7.40 -2.39 -0.02 3.78 16 15 C -0.17 -3.66 10.18 30.61 0.31 -3.35 16 16 C -0.11 -2.44 5.77 -10.77 -0.06 -2.50 16 17 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 18 C -0.14 -2.70 5.85 -10.79 -0.06 -2.76 16 19 C -0.19 -3.42 10.25 30.61 0.31 -3.11 16 20 C -0.16 -2.39 10.25 30.61 0.31 -2.08 16 21 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 22 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.41 11.87 8.83 -92.70 -0.82 11.05 16 25 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -69.20 273.57 2.73 -66.47 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.30 Total: 16.01 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 2.63 Total: -16.92 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -2.18 Total: -81.21 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.05 Total: -32.13 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.20 2.73 -66.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143206926.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.726 kcal (2) G-P(sol) polarization free energy of solvation -69.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds