Wall clock time and date at job start Sun Mar 29 2020 21:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99901 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00338 * 179.97438 * 10 9 7 13 13 C 1.46497 * 120.00288 * 179.97438 * 12 10 9 14 14 H 1.09001 * 115.55270 * 350.72082 * 13 12 10 15 15 C 1.52998 * 117.50142 * 136.39430 * 13 12 10 16 16 C 1.52994 * 60.00180 * 107.48893 * 15 13 12 17 17 H 1.08999 * 117.49575 * 107.49407 * 16 15 13 18 18 C 1.52998 * 117.50111 * 252.51247 * 16 15 13 19 19 C 1.53003 * 117.49938 * 197.24825 * 18 16 15 20 20 C 1.52998 * 117.50193 * 128.62212 * 18 16 15 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 0.97006 * 120.00251 * 0.02562 * 12 10 9 25 25 H 1.09004 * 117.50286 * 214.98266 * 15 13 12 26 26 H 1.09000 * 117.49464 * 359.97438 * 15 13 12 27 27 H 1.09001 * 115.54863 * 342.94853 * 18 16 15 28 28 H 1.09000 * 117.49942 * 359.97438 * 19 18 16 29 29 H 1.08999 * 117.49885 * 145.01507 * 19 18 16 30 30 H 1.08994 * 117.50194 * 214.97630 * 20 18 16 31 31 H 1.09001 * 117.49483 * 0.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0010 12 7 1.7811 -4.9153 0.0000 13 6 2.7330 -6.0288 -0.0006 14 1 3.7761 -5.7556 -0.1600 15 6 2.4459 -7.2042 0.9358 16 6 2.2569 -7.3650 -0.5739 17 1 2.9867 -7.9711 -1.1107 18 6 0.8229 -7.4360 -1.1028 19 6 0.6170 -7.9912 -2.5135 20 6 0.4448 -6.4943 -2.2478 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 0.8273 -5.0926 0.0000 25 1 3.3000 -7.7045 1.3922 26 1 1.5489 -7.1488 1.5525 27 1 0.0577 -7.6559 -0.3584 28 1 1.5030 -8.3056 -3.0651 29 1 -0.2839 -8.5766 -2.6974 30 1 -0.5693 -6.0949 -2.2569 31 1 1.2178 -5.8245 -2.6246 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143206929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:47 Heat of formation + Delta-G solvation = 0.339584 kcal Electronic energy + Delta-G solvation = -13385.819887 eV Core-core repulsion = 11054.425982 eV Total energy + Delta-G solvation = -2331.393905 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.33978 -37.70821 -35.22057 -32.90491 -32.05730 -28.74353 -24.12134 -23.59549 -22.35413 -21.67707 -20.02750 -19.30687 -16.43882 -16.13128 -15.75978 -15.21871 -14.38162 -14.18655 -14.06822 -13.66133 -12.78480 -12.07999 -12.05304 -11.78323 -11.42228 -11.32574 -10.98791 -10.82056 -10.73949 -10.57791 -10.14527 -9.96217 -9.64758 -9.27232 -8.65450 -8.42116 -8.13210 -6.04292 -4.03728 3.38714 3.40607 3.45863 3.47450 3.79225 3.83501 4.14154 4.50056 4.68649 4.86214 4.94518 5.11083 5.25034 5.33971 5.39919 5.45564 5.64571 5.80478 5.91417 5.97963 6.11599 6.17322 6.26370 6.47037 7.09747 7.22372 7.34208 7.97486 8.08357 8.46638 9.06840 9.24960 9.61237 11.08112 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.048916 B = 0.006791 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.277998 B = 4122.375242 C = 4441.909482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.517 3.483 11 O -0.546 6.546 12 N -0.715 5.715 13 C 0.098 3.902 14 H 0.132 0.868 15 C -0.193 4.193 16 C -0.140 4.140 17 H 0.107 0.893 18 C -0.127 4.127 19 C -0.178 4.178 20 C -0.172 4.172 21 H 0.262 0.738 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.398 0.602 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.466 -14.923 -1.833 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.093 0.907 9 C -0.033 4.033 10 C 0.308 3.692 11 O -0.422 6.422 12 N -0.366 5.366 13 C -0.009 4.009 14 H 0.149 0.851 15 C -0.231 4.231 16 C -0.160 4.160 17 H 0.125 0.875 18 C -0.145 4.145 19 C -0.215 4.215 20 C -0.209 4.209 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.232 0.768 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.254 -14.572 -1.835 14.690 hybrid contribution -0.168 0.625 0.036 0.648 sum 0.086 -13.948 -1.799 14.064 Atomic orbital electron populations 1.69953 1.06039 1.26998 1.51129 1.25010 0.94915 0.99475 0.95217 0.86476 0.79371 0.82260 0.78861 1.21365 1.20122 1.20133 1.21130 0.94234 0.89127 1.50187 0.90735 1.19230 0.94133 0.90477 0.99471 1.22044 0.91122 0.83229 0.72807 1.90522 1.18087 1.84578 1.49011 1.45737 1.08844 1.05003 1.77030 1.21540 0.95664 0.82071 1.01650 0.85055 1.23495 1.03668 1.03745 0.92228 1.22252 0.96056 1.01536 0.96128 0.87475 1.21647 0.95776 1.05605 0.91467 1.22943 1.02939 0.97099 0.98513 1.23015 1.03008 0.92693 1.02187 0.92865 0.93489 0.93411 0.76786 0.88465 0.88665 0.87827 0.89006 0.89060 0.88604 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.89 8.92 -34.44 -0.31 -15.20 16 8 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 9 C 0.01 0.16 5.46 -29.04 -0.16 0.00 16 10 C 0.52 11.91 7.82 -10.99 -0.09 11.82 16 11 O -0.55 -14.37 15.03 5.56 0.08 -14.29 16 12 N -0.71 -12.54 4.90 -53.81 -0.26 -12.80 16 13 C 0.10 1.49 6.36 -67.93 -0.43 1.06 16 14 H 0.13 2.20 7.40 -51.93 -0.38 1.81 16 15 C -0.19 -2.31 10.18 -26.73 -0.27 -2.59 16 16 C -0.14 -1.66 5.87 -90.62 -0.53 -2.20 16 17 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.13 -1.41 5.02 -90.62 -0.46 -1.87 16 19 C -0.18 -1.80 10.25 -26.73 -0.27 -2.08 16 20 C -0.17 -2.05 9.10 -26.73 -0.24 -2.29 16 21 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 22 H 0.05 1.22 8.14 -51.92 -0.42 0.79 16 23 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.40 6.16 7.42 -40.82 -0.30 5.86 16 25 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 269.81 15.07 4.07 4.07 Total: -1.00 -31.68 269.81 -7.66 -39.34 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.40 Total: 4.10 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.86 Total: -11.86 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.47 Total: -38.63 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.08 Total: -14.29 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.68 -7.66 -39.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143206929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.681 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds