Wall clock time and date at job start Sun Mar 29 2020 21:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99901 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00338 * 179.97438 * 10 9 7 13 13 C 1.46497 * 120.00288 * 179.97438 * 12 10 9 14 14 H 1.09001 * 115.55270 * 350.72082 * 13 12 10 15 15 C 1.52998 * 117.50142 * 136.39430 * 13 12 10 16 16 C 1.52994 * 60.00180 * 107.48893 * 15 13 12 17 17 H 1.08999 * 117.49575 * 107.49407 * 16 15 13 18 18 C 1.52998 * 117.50111 * 252.51247 * 16 15 13 19 19 C 1.53003 * 117.49938 * 197.24825 * 18 16 15 20 20 C 1.52998 * 117.50193 * 128.62212 * 18 16 15 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 0.97006 * 120.00251 * 0.02562 * 12 10 9 25 25 H 1.09004 * 117.50286 * 214.98266 * 15 13 12 26 26 H 1.09000 * 117.49464 * 359.97438 * 15 13 12 27 27 H 1.09001 * 115.54863 * 342.94853 * 18 16 15 28 28 H 1.09000 * 117.49942 * 359.97438 * 19 18 16 29 29 H 1.08999 * 117.49885 * 145.01507 * 19 18 16 30 30 H 1.08994 * 117.50194 * 214.97630 * 20 18 16 31 31 H 1.09001 * 117.49483 * 0.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0010 12 7 1.7811 -4.9153 0.0000 13 6 2.7330 -6.0288 -0.0006 14 1 3.7761 -5.7556 -0.1600 15 6 2.4459 -7.2042 0.9358 16 6 2.2569 -7.3650 -0.5739 17 1 2.9867 -7.9711 -1.1107 18 6 0.8229 -7.4360 -1.1028 19 6 0.6170 -7.9912 -2.5135 20 6 0.4448 -6.4943 -2.2478 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 0.8273 -5.0926 0.0000 25 1 3.3000 -7.7045 1.3922 26 1 1.5489 -7.1488 1.5525 27 1 0.0577 -7.6559 -0.3584 28 1 1.5030 -8.3056 -3.0651 29 1 -0.2839 -8.5766 -2.6974 30 1 -0.5693 -6.0949 -2.2569 31 1 1.2178 -5.8245 -2.6246 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143206929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:47 Heat of formation + Delta-G solvation = -19.661929 kcal Electronic energy + Delta-G solvation = -13386.687217 eV Core-core repulsion = 11054.425982 eV Total energy + Delta-G solvation = -2332.261236 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.76913 -39.11913 -36.32131 -35.09746 -33.61834 -30.80452 -25.99905 -24.73832 -23.27240 -22.90309 -21.56463 -20.51979 -18.53542 -17.76408 -17.17749 -16.50465 -16.09536 -15.93006 -15.41737 -14.83327 -14.45593 -14.14960 -13.40720 -13.15680 -12.80194 -12.73818 -12.52335 -12.30432 -12.15425 -12.03595 -11.74353 -11.47553 -11.13554 -10.69985 -10.62930 -10.52014 -9.51406 -8.25666 -6.33157 1.40014 1.43083 1.51717 1.81519 2.29053 2.48355 2.73344 3.08726 3.11182 3.72283 3.84376 3.95287 4.17257 4.24467 4.33527 4.48471 4.51731 4.84009 4.88654 4.96669 5.06375 5.08388 5.23376 5.24840 5.30376 5.33518 5.64600 5.76565 6.05330 6.70429 6.83716 7.33042 7.51848 8.86372 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.048916 B = 0.006791 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.277998 B = 4122.375242 C = 4441.909482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.055 0.945 9 C 0.010 3.990 10 C 0.521 3.479 11 O -0.587 6.587 12 N -0.691 5.691 13 C 0.054 3.946 14 H 0.110 0.890 15 C -0.169 4.169 16 C -0.116 4.116 17 H 0.123 0.877 18 C -0.131 4.131 19 C -0.158 4.158 20 C -0.192 4.192 21 H 0.268 0.732 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.409 0.591 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -16.303 -1.733 16.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.073 0.927 9 C -0.030 4.030 10 C 0.310 3.690 11 O -0.467 6.467 12 N -0.342 5.342 13 C -0.052 4.052 14 H 0.128 0.872 15 C -0.207 4.207 16 C -0.136 4.136 17 H 0.141 0.859 18 C -0.149 4.149 19 C -0.195 4.195 20 C -0.229 4.229 21 H 0.077 0.923 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.245 0.755 25 H 0.135 0.865 26 H 0.122 0.878 27 H 0.135 0.865 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.156 -16.012 -1.736 16.107 hybrid contribution -0.090 0.965 -0.012 0.969 sum -0.246 -15.047 -1.748 15.150 Atomic orbital electron populations 1.70026 1.07139 1.28190 1.51048 1.25804 0.95877 1.02769 0.94414 0.85497 0.78360 0.78242 0.78912 1.19761 1.19726 1.19782 1.21345 0.93680 0.91290 1.51395 0.92713 1.19057 0.94243 0.90899 0.98773 1.21458 0.89850 0.84530 0.73132 1.90495 1.19252 1.85451 1.51468 1.45330 1.09912 1.04031 1.74930 1.21673 0.94296 0.82487 1.06736 0.87166 1.23588 1.04608 1.00102 0.92442 1.22341 0.96807 0.97962 0.96445 0.85868 1.21759 0.95504 1.05462 0.92213 1.23037 1.03960 0.95342 0.97177 1.22954 1.02449 0.93766 1.03700 0.92344 0.94077 0.94018 0.75450 0.86505 0.87796 0.86468 0.88432 0.87166 0.88275 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.67 13.29 21.45 0.28 -54.38 16 2 C 0.01 0.58 5.46 84.66 0.46 1.04 16 3 Si 0.97 45.85 29.54 68.60 2.03 47.88 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.54 -32.43 8.92 25.60 0.23 -32.20 16 8 H 0.05 3.46 6.75 -2.91 -0.02 3.44 16 9 C 0.01 0.52 5.46 29.10 0.16 0.67 16 10 C 0.52 24.68 7.82 87.66 0.69 25.37 16 11 O -0.59 -32.06 15.03 -3.03 -0.05 -32.11 16 12 N -0.69 -24.34 4.90 -442.55 -2.17 -26.50 16 13 C 0.05 1.61 6.36 44.99 0.29 1.89 16 14 H 0.11 3.77 7.40 -2.39 -0.02 3.75 16 15 C -0.17 -3.60 10.18 30.59 0.31 -3.29 16 16 C -0.12 -2.47 5.87 -10.80 -0.06 -2.54 16 17 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 18 C -0.13 -2.58 5.02 -10.79 -0.05 -2.63 16 19 C -0.16 -2.75 10.25 30.60 0.31 -2.44 16 20 C -0.19 -4.34 9.10 30.60 0.28 -4.06 16 21 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 22 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 23 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.41 12.48 7.42 -92.70 -0.69 11.79 16 25 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -68.85 269.81 3.14 -65.71 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.43 Total: 17.57 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: 2.61 Total: -18.17 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -1.88 Total: -80.89 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.05 Total: -32.11 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -68.85 3.14 -65.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143206929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.050 kcal (2) G-P(sol) polarization free energy of solvation -68.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds