Wall clock time and date at job start Sun Mar 29 2020 21:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99961 * 2 1 4 4 H 1.48504 * 109.46853 * 239.99965 * 3 2 1 5 5 H 1.48500 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46799 * 120.00141 * 3 2 1 7 7 C 1.37877 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00422 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99666 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.47136 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99432 * 359.97438 * 10 9 7 12 12 N 1.34769 * 120.00395 * 180.02562 * 10 9 7 13 13 C 1.46496 * 120.00360 * 180.02562 * 12 10 9 14 14 H 1.09001 * 115.55059 * 9.27175 * 13 12 10 15 15 C 1.53006 * 117.49756 * 223.60837 * 13 12 10 16 16 C 1.52997 * 117.50365 * 154.98596 * 13 12 10 17 17 H 1.09002 * 117.49884 * 214.98231 * 16 13 12 18 18 C 1.53006 * 117.49537 * 359.97438 * 16 13 12 19 19 C 1.53001 * 117.49881 * 248.63480 * 18 16 13 20 20 C 1.52996 * 60.00003 * 252.51464 * 19 18 16 21 21 H 0.97000 * 119.99792 * 0.02562 * 1 2 3 22 22 H 1.08994 * 109.47228 * 60.00104 * 9 7 2 23 23 H 1.09000 * 109.47194 * 300.00093 * 9 7 2 24 24 H 0.97009 * 119.99984 * 359.97438 * 12 10 9 25 25 H 1.08990 * 117.50086 * 359.97438 * 15 13 12 26 26 H 1.09004 * 117.49623 * 145.02212 * 15 13 12 27 27 H 1.09004 * 115.54889 * 34.34803 * 18 16 13 28 28 H 1.08997 * 117.49770 * 0.02562 * 19 18 16 29 29 H 1.09002 * 117.49400 * 145.02040 * 19 18 16 30 30 H 1.09007 * 117.49656 * 252.51304 * 20 19 18 31 31 H 1.08995 * 117.50163 * 107.49372 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0010 12 7 1.7811 -4.9153 -0.0011 13 6 2.7331 -6.0288 -0.0005 14 1 3.7762 -5.7555 0.1588 15 6 2.4459 -7.2042 -0.9370 16 6 2.2570 -7.3650 0.5728 17 1 2.9869 -7.9710 1.1097 18 6 0.8232 -7.4359 1.1022 19 6 0.6347 -7.5966 2.6120 20 6 0.3472 -8.7720 1.6758 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8902 23 1 0.6247 -2.5570 0.8897 24 1 0.8274 -5.0926 -0.0011 25 1 1.5485 -7.1492 -1.5531 26 1 3.3001 -7.7044 -1.3933 27 1 0.0933 -6.8301 0.5651 28 1 1.5322 -7.6514 3.2282 29 1 -0.2193 -7.0963 3.0686 30 1 -0.6960 -9.0451 1.5165 31 1 1.0554 -9.6005 1.6760 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143206930.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:48 Heat of formation + Delta-G solvation = 0.410347 kcal Electronic energy + Delta-G solvation = -13225.900763 eV Core-core repulsion = 10894.509926 eV Total energy + Delta-G solvation = -2331.390837 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.29027 -37.75027 -35.40339 -32.90860 -32.03060 -28.74199 -24.05316 -23.71167 -22.43101 -21.55753 -20.32999 -19.19483 -16.45413 -16.40031 -15.74007 -15.14783 -14.37009 -14.17345 -14.00842 -13.68181 -12.82804 -12.06950 -12.06170 -11.69530 -11.56710 -11.32935 -11.16782 -10.95467 -10.78699 -10.58385 -10.27515 -9.95544 -9.49650 -9.27546 -8.66239 -8.42350 -8.16414 -6.04430 -4.03956 3.38750 3.40640 3.41748 3.46084 3.73109 3.81739 4.30580 4.49168 4.51426 4.79192 4.92121 5.20835 5.22549 5.24672 5.33805 5.38280 5.56992 5.79897 5.83047 5.91944 6.04889 6.09602 6.24207 6.45878 7.07557 7.21071 7.33588 7.97201 8.06516 8.44741 9.06610 9.23456 9.61033 11.07997 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051745 B = 0.006263 C = 0.005873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.982804 B = 4469.517772 C = 4766.188174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.055 3.945 3 Si 0.903 3.097 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.075 0.925 9 C 0.006 3.994 10 C 0.518 3.482 11 O -0.545 6.545 12 N -0.717 5.717 13 C 0.099 3.901 14 H 0.133 0.867 15 C -0.192 4.192 16 C -0.138 4.138 17 H 0.106 0.894 18 C -0.120 4.120 19 C -0.174 4.174 20 C -0.179 4.179 21 H 0.262 0.738 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.396 0.604 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 -15.622 1.650 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.547 4.547 8 H 0.093 0.907 9 C -0.034 4.034 10 C 0.308 3.692 11 O -0.421 6.421 12 N -0.369 5.369 13 C -0.009 4.009 14 H 0.151 0.849 15 C -0.231 4.231 16 C -0.158 4.158 17 H 0.124 0.876 18 C -0.139 4.139 19 C -0.211 4.211 20 C -0.216 4.216 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.230 0.770 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.279 -15.272 1.652 15.364 hybrid contribution -0.178 0.648 -0.022 0.672 sum 0.102 -14.624 1.630 14.715 Atomic orbital electron populations 1.69953 1.06048 1.27012 1.51131 1.25010 0.94915 0.99485 0.95200 0.86471 0.79367 0.82234 0.78869 1.20117 1.21362 1.20116 1.21127 0.94242 0.89107 1.50202 0.90714 1.19239 0.94144 0.90490 0.99486 1.22051 0.91150 0.83198 0.72751 1.90522 1.18078 1.84543 1.48931 1.45773 1.08747 1.05157 1.77238 1.21542 0.95740 0.81953 1.01632 0.84943 1.23479 1.03651 1.03645 0.92351 1.22230 0.95853 1.01601 0.96111 0.87581 1.21581 0.95774 1.00295 0.96211 1.22922 1.03383 1.02149 0.92659 1.22927 1.01812 0.92019 1.04830 0.92857 0.93439 0.93413 0.76950 0.88627 0.88407 0.87895 0.88798 0.88667 0.88941 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.92 8.92 -34.44 -0.31 -15.23 16 8 H 0.07 2.28 6.75 -52.49 -0.35 1.93 16 9 C 0.01 0.15 5.46 -29.03 -0.16 -0.01 16 10 C 0.52 12.00 7.82 -10.99 -0.09 11.91 16 11 O -0.54 -14.40 15.03 5.56 0.08 -14.32 16 12 N -0.72 -12.68 5.34 -53.81 -0.29 -12.97 16 13 C 0.10 1.50 6.41 -67.93 -0.44 1.07 16 14 H 0.13 2.22 7.40 -51.93 -0.38 1.84 16 15 C -0.19 -2.32 10.18 -26.73 -0.27 -2.59 16 16 C -0.14 -1.65 5.85 -90.62 -0.53 -2.18 16 17 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 18 C -0.12 -1.35 5.34 -90.62 -0.48 -1.84 16 19 C -0.17 -1.85 10.25 -26.73 -0.27 -2.12 16 20 C -0.18 -1.69 10.25 -26.73 -0.27 -1.97 16 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 22 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 23 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 24 H 0.40 6.08 7.15 -40.82 -0.29 5.79 16 25 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.10 1.17 6.87 -51.93 -0.36 0.82 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 270.21 15.07 4.07 4.07 Total: -1.00 -31.97 270.21 -7.66 -39.63 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.33 Total: 3.66 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -2.92 Total: -11.47 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.45 Total: -38.85 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.08 Total: -14.32 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.97 -7.66 -39.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143206930.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.039 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds